Protein Info for mRNA_434 in Rhodosporidium toruloides IFO0880

Name: 8802
Annotation: K08738 CYC cytochrome c

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 108 PF13442: Cytochrome_CBB3" amino acids 7 to 103 (97 residues), 31.5 bits, see alignment E=1.9e-11 PF00034: Cytochrom_C" amino acids 8 to 105 (98 residues), 47 bits, see alignment E=4.7e-16

Best Hits

Swiss-Prot: 79% identical to CYC_THELA: Cytochrome c from Thermomyces lanuginosus

KEGG orthology group: K08738, cytochrome c (inferred from 81% identity to tml:GSTUM_00001154001)

MetaCyc: 60% identical to cytochrome c (Homo sapiens)

Predicted SEED Role

"membrane c-type cytochrome cy" in subsystem Terminal cytochrome C oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (108 amino acids)

>mRNA_434 K08738 CYC cytochrome c (Rhodosporidium toruloides IFO0880)
MGFESGDAAKGANLFKTRCAQCHTVESGGANKVGPNLHGLFGRQSGSVESFSYTEANKKA
AVHWDENTLFDYLENPKKYIPGTKMAFAGLKKAKDRNDLITWLKESTA