Protein Info for mRNA_451 in Rhodosporidium toruloides IFO0880

Name: 8819
Annotation: K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

Best Hits

KEGG orthology group: K00830, alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC: 2.6.1.44 2.6.1.45 2.6.1.51] (inferred from 66% identity to scm:SCHCODRAFT_10951)

Predicted SEED Role

"Serine--glyoxylate aminotransferase (EC 2.6.1.45)" in subsystem Photorespiration (oxidative C2 cycle) or Serine-glyoxylate cycle (EC 2.6.1.45)

MetaCyc Pathways

glycine biosynthesis III (1/1 steps found)
photorespiration (6/9 steps found)
L-serine biosynthesis II (2/4 steps found)
formaldehyde assimilation I (serine pathway) (6/13 steps found)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.6.1.44 or 2.6.1.45 or 2.6.1.51

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>mRNA_451 K00830 AGXT alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase (Rhodosporidium toruloides IFO0880)
MSTQPTNHFTQAPHKLLSVPGPVEVSDEVLYANAHPSMSHVSPAFAPVFGDCLRMLRKLL
YTEKGQPFIIAGSGTLGWDLVAANLIERDQKALVLNTGYFGDAFADCLETYGAKVDQVGA
PVGGRPTMQQVEEALKKEKYAVLTFTHVDTSTGVLSDAKAIAETVRRVSPDTLIVLDGVC
AVASEEIRMDEWEIDVVVGASQKGISVPPGLSITALSQKALQVLENRKTPVPSYFANYKR
WLPVMESYEKGTPAYFATPSVNLIYALEASLKTIVSGPVSLEDRFRMHKEAAQKFRDATL
KLGFKLVATEEGGAANGMTALYVPEDVPPPALIGALAERGIVIAGGLHKDIKVRSNVTDV
GQA