Protein Info for mRNA_472 in Rhodosporidium toruloides IFO0880

Name: 8840
Annotation: KOG0987 DNA helicase PIF1/RRM3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 357 PF05970: PIF1" amino acids 31 to 113 (83 residues), 43.1 bits, see alignment E=1.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (357 amino acids)

>mRNA_472 KOG0987 DNA helicase PIF1/RRM3 (Rhodosporidium toruloides IFO0880)
MLNEMRFGKLRKSSIDKFYALKRELKYSEIEPTELFPMRHDVDRANTNRLRSLAGESRLF
RAEDSEPDPSKQGQWFKNIMAPDVLELKIGAQVMLIKNLDQNLVNGTVGHVVGFGVPELA
DEEEEEEGGREGWTLNSRDEPVRVKGEMSVTEARKRQKIAEGVASGRIEQGPVVAWQTPN
GIEKKVMVREEFKHEDNNGQKLSWRKQYPIILAWAMRCASASPPRTSSTADVCPRTASTS
HKARRSSASKSTSAKSSRRASRTSPSLARRRSRDCRSSASIRRRCSRTRRSSSGAPQLDS
PSMHRFASPSLPRIASSFVFRLSPVPTRFLPSPSRLACHPSSLASLCNVTFAVSTAL