Protein Info for mRNA_479 in Rhodosporidium toruloides IFO0880

Name: 8847
Annotation: K17302 COPB2, SEC27 coatomer subunit beta'

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 899 PF00400: WD40" amino acids 49 to 83 (35 residues), 16.1 bits, see alignment (E = 2.6e-06) amino acids 88 to 125 (38 residues), 30.9 bits, see alignment (E = 5.5e-11) amino acids 130 to 169 (40 residues), 22.7 bits, see alignment (E = 2.2e-08) amino acids 178 to 213 (36 residues), 17.3 bits, see alignment (E = 1.1e-06) amino acids 218 to 254 (37 residues), 32.4 bits, see alignment (E = 1.8e-11) PF04053: Coatomer_WDAD" amino acids 319 to 764 (446 residues), 528 bits, see alignment E=3.6e-162

Best Hits

Swiss-Prot: 52% identical to COB22_ORYSJ: Coatomer subunit beta'-2 (Os02g0209100) from Oryza sativa subsp. japonica

KEGG orthology group: None (inferred from 60% identity to mgl:MGL_1409)

Predicted SEED Role

"High-affnity carbon uptake protein Hat/HatR" in subsystem CO2 uptake, carboxysome or Carboxysome

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (899 amino acids)

>mRNA_479 K17302 COPB2, SEC27 coatomer subunit beta' (Rhodosporidium toruloides IFO0880)
MLLDINRKLLARCARVKAVDFHPTEPWLITGLYTGNVIIYHVDTGAIIKTFEVTEVPVRC
VRFIARKNWFVCGSDDFHLRVFNYNTGEKVTALEAHPDYIRCLAVHPTQPLVLTGSDDMT
IKLWDWEKGWKCIQVYEGHTHYIMNLAFNPKDSNTFASACLDRTVKVWSLGSPVANFTLD
AHDKGVNYVEYYHGGDKPYLVTCGDDRLIKVWDYLSKSCIQTLEGHTSNVSFVIFHPSLP
VLVSGSEDGTVKIWHSATYRLENTLDYGLERAWCVAYARKGNDVAFGFDEGAVVVKLGRE
EPSVSMDHSGKVVYARNAEILTVALQSTADESIPDGQQLSLAPRELGNTEVFASTLQHSP
NGRFVTVCGDGEYIIYTALAWRNKAFGQGVGFAWASDSNTYAVREAGSKIRVYRNFKERP
NLVQVTYPTDGVYGGPLLGVKGMGFVVFYDWETGAIVRRIEVEARDVSWSTTGNLVAIAG
DESFYVLRFDRDAYQARLDSGAEIDDEGVEEAFELESEISDAVQTAKWVGDCFVYTTAAN
RLNYLVGGQTHTITHFDTTMYLLGYLPQHNRIYLCDKDVNLYAYSLSLSVIEYQTAILRG
DLDAANEILPSVPHDQRNRIARFLEAQELRELALEISTDPDHKFDLAIALDDLETALSLA
RSSPHLGSQTKWRAVGDRALAGWKIQLAEECFKQANDLSALLLIYTSTGDRAGLEGLVER
ATEQGAFNIAFAAALQIGESSKCVDTLLATDRAPEAALFARTYAPSQAPRALKAWKKQLE
AAKKPKQANALADPETNPEEFGDWNEALERERSRPPPGSEQPDLVQFGEEERGADEREGE
AAYGQQEQQVTNGLAGLSFQDSHAHANGDLIDADDADLPPAIPVVNGAPPAQQEEDLLA