Protein Info for mRNA_481 in Rhodosporidium toruloides IFO0880

Name: 8849
Annotation: K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 783 PF00439: Bromodomain" amino acids 34 to 104 (71 residues), 56.3 bits, see alignment E=2.8e-19 amino acids 303 to 371 (69 residues), 42.3 bits, see alignment E=6.8e-15 PF01426: BAH" amino acids 457 to 577 (121 residues), 51.7 bits, see alignment E=8e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (783 amino acids)

>mRNA_481 K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2 (Rhodosporidium toruloides IFO0880)
MPLPPQVQQALESVIGSIYNLQTSAGGGYKRYYSAIFRDLPDRYEYPDYYVVIKEPRCLH
GVLENMGRGAYSSAQAVAFDLFLIWSNAREYNEQGSLVYADADKLEDYMERLWRERCPPL
PPFESLPRPGAAAPPPVAATPAEPERKVKRIKLTGSLGSSAASPGPAGNTPTTPSALGPT
KPSLTIKLGGNRQTVGAAGGIGASGAGLPPLPTLPTLPTLPAHASDRQQATGGYVSSQAE
ASTARAVKAESAGPDGDDAPSTTPAVPTVPDTESGWMGGDIGGEPAQVYRDILAKIRTYT
DTSGRPLATPLIDIPDREARPDYYELVSDPVSLNTIEAKVNAGAYATPEAFDRDLHHLFA
VAKLFIRPESPGTIYTDLMVLQRLYQELTKRVSPLSRTAEISDAAALASVRGGPGNVQHA
RGDEGAVGLDLKSRATTRPTTKDKIFLDSIHFKGDVLETGDWVLLLNPDNPGKPIIAQIW
KTYRRQDSPQRCLSVCWYYRPEETVHPASRTFYENEVFKTGVFMDHNVEDFLDRCFVMFF
TRYTRGRPKPPAWTPSIPLFVCEHRYKDDVKAFKKIKSWASCIPEEIRVHEYDFEPFEDG
RVEQLARVKSPFVRGMAGPGRLSGAAASAPAYHFSQDGKPQTAEEAKATLPEARAQPASS
FAPTAAQPRAGFESPAPVPQPTFPSLTAQTPAIPSLSSLLPALSDFAVEPVGASSPASTP
AEQAASLEDFAPLPASLKSKFRSDALGDVLWFSAPAAAVAPIARPAHSLEYLYWRAQQRQ
QLA