Protein Info for mRNA_513 in Rhodosporidium toruloides IFO0880

Name: 8881
Annotation: K09468 MSN2_4 zinc finger protein MSN2/4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 648 PF00096: zf-C2H2" amino acids 540 to 565 (26 residues), 23.1 bits, see alignment (E = 3.9e-09) amino acids 571 to 595 (25 residues), 19.5 bits, see alignment (E = 5.5e-08)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (648 amino acids)

>mRNA_513 K09468 MSN2_4 zinc finger protein MSN2/4 (Rhodosporidium toruloides IFO0880)
MQAEPSASPVQIPHARSVSYNPDSSTQGATSRSPPAQALQAYSFPAPPRSASGDEHLQVR
RETASASPALGEYAHPSSRYEANFSYAAPRHDDAEEQYRSSALSARQYHPAGMYGLDSRG
LPEGYQQPRSLSNAGLPPLDEAQLARISSPSYAAALAAYDHDPRERTVSGESEQRGPPSF
TFPDYASHPAQYPPNYLPPPPLAQFPQSYLTYRPYPTSSSAGHPLARGGAAYNAGSPPPT
LEWAKPRGSSEESSSHATRAHTSSFASTSRYQSSSAHTDAAVYYQHAYGLMARSNSNQSG
LSSYTESTESSHQSHSTSSEYEGHVNPAFVNAAGRANSDSGYVSSGTGEMEALHLDEQDK
HEHEQDEYEDEQPKTRMRTRSAMVIVGPTRRTKQSRDATIRGPYSSSSQNTLRALAPGSS
SSSTQAADSGSKARRRISSNIYHPTPQSMLAPGVVAPSAGALAAPKDKDPANFPGTNSAS
IPSNEDFARMPTKRSRGRRPPCTPDLDLDPEDLEDPEFKLTEAQMAYAGVTKTGKPKKIF
VCKVPGCGKLFKRSEHLKRHVRSIHTNERPFQCRWPGCERRFTRHDNLWQHLRVHRDPGS
SDAEFSAAIQRHFGENGRGEIVKQETREESLEIDYDGEMAEQPVSDEE