Protein Info for mRNA_514 in Rhodosporidium toruloides IFO0880
Name: 8882
Annotation: KOG0417 Ubiquitin-protein ligase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 62% identical to UBC11_ARATH: Ubiquitin-conjugating enzyme E2 11 (UBC11) from Arabidopsis thaliana
KEGG orthology group: K06689, ubiquitin-conjugating enzyme E2 D/E [EC: 6.3.2.19] (inferred from 63% identity to vcn:VOLCADRAFT_80460)MetaCyc: 62% identical to ubiquitin-conjugating enzyme E2D2 (Homo sapiens)
RXN-15556 [EC: 2.3.2.23]
Predicted SEED Role
No annotation
MetaCyc Pathways
- protein ubiquitination (3/9 steps found)
Isozymes
Compare fitness of predicted isozymes for: 6.3.2.19
Use Curated BLAST to search for 2.3.2.23 or 6.3.2.19
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (184 amino acids)
>mRNA_514 KOG0417 Ubiquitin-protein ligase (Rhodosporidium toruloides IFO0880) MPPKGPQAMSAKRIAKELNDLKKDALPQGCTAGPASDENVYEWSASIEGPPDSPYAGGVF QLHITLPADYPFRPPRVVFMTKIYHANINNQGGICLDILKNQWSPALSIVKVLLSVASLL ADPNPHDPLMPDIAQRYLKNRKEHDKTAREWTQKYAMPVKKPASTPAESSKDGKKKEVEV LVID