Protein Info for mRNA_524 in Rhodosporidium toruloides IFO0880

Name: 8892
Annotation: KOG0519 Sensory transduction histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1032 PF02518: HATPase_c" amino acids 674 to 788 (115 residues), 61.9 bits, see alignment E=7.9e-21 PF00072: Response_reg" amino acids 882 to 980 (99 residues), 51 bits, see alignment E=1.5e-17

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1032 amino acids)

>mRNA_524 KOG0519 Sensory transduction histidine kinase (Rhodosporidium toruloides IFO0880)
MAAAALPPTSLPREPDALPLDSVPTPRLARQGPATTTPAASALVDSDVLHAWRCWWMDYS
LGHFEETATPSAALQQLLDNPGADLKAGEPSYAGNYSGGPETAEQALEFYARHKYIPPPY
SPDERKRVQLVRKFHLDGSTPLVAVSELCELVRSFFEPDITVLATSLTASRTCLIGISQS
PQDDLDWQTSLEEIESTWCMCRHGIFAGEDDAFVVLDTAKDWRVGNIPLYSESGKLHFYA
GVRISLPSDALDDGQSGPSRPIPIGTLCAVSHQSQTEVTQPQLTALKTLARRIEREILVE
NEARLRRRGQEQAAFVSEFLQLTLGGSTSPSKASPGMEAVLSANPNDPPAPSSPTSAAFM
HAAQRLCDLTGVSSAAIVDTRSSTASPQNSAGWCPDSCGGARRPRIVYRAETPEGSTYEI
EEGVAPLAVLGQAGVPKEQLEKAETLNKEDLRNFDDFVRRLRIGQHGAEALPDKILSHLI
VGKADSTRLIPIFDHNQALALLIVVSLPDPLLELGDGDRTFAKNIGWVCLSALIRDQSSE
SDRTKLAFVSSISHALRLPLHGLAGQLELMRGAGAGVDEYLRVADVCMDSLRSLLDDSVD
FYNLNDQPTTQATSSSSSEIVDLAELLQDVTARSLTRAVQLAQQEGEDAPSTKDVRVVVD
IAARQNGWLARSRPSGLRRIFGNVIENAWSYTDAGEVTVSLQLADGTSTSRPGEQLVKVS
ISDTGCGMSEAFLRSGKLFQPFRRADAYVPGIGLGLPLSSLLVAQHGGQIHVTSVPAKGT
TVDILLPMLFVASRPAPAIRRTLSDEIMMASKAFSSARFAKSDCPSCRSSRSSSPPSSRP
TTPDESPVRHDESPKQQDLSKHNSISFGEAAAPATRNRPLRVLGCEDNAIARNLLAALVK
QKGYEFRAAADGQQGVSIFRDDLYRPDVTVMDIGMPVMDGLETATVMREIEQANGWPRHR
IIALTGLSNEQDRVKAMSNGGPIDEWLLKGGDSLRVLTAELARMQAQINEGETATCTCAP
IALSSSPEPLSA