Protein Info for mRNA_526 in Rhodosporidium toruloides IFO0880

Name: 8894
Annotation: K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 PF01199: Ribosomal_L34e" amino acids 1 to 94 (94 residues), 144.4 bits, see alignment E=5.5e-47

Best Hits

Swiss-Prot: 63% identical to RL34B_YEAST: 60S ribosomal protein L34-B (RPL34B) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K02915, large subunit ribosomal protein L34e (inferred from 72% identity to ssl:SS1G_03209)

Predicted SEED Role

"LSU ribosomal protein L34e" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (115 amino acids)

>mRNA_526 K02915 RP-L34e, RPL34 large subunit ribosomal protein L34e (Rhodosporidium toruloides IFO0880)
MVQRVTLRTRKSYSTKSNGKRIVKTPGGKLRYLTVKKAAAAPKCGDCHIALPGVPALRPR
QYAQISKREKTVQRAYGGSRCANCVRDRIVRAFLVEEAKIVKRVLAQQQAKKEKK