Protein Info for mRNA_534 in Rhodosporidium toruloides IFO0880

Name: 8902
Annotation: K08054 CANX calnexin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 582 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 488 to 512 (25 residues), see Phobius details PF00262: Calreticulin" amino acids 33 to 401 (369 residues), 553.9 bits, see alignment E=7.5e-171

Best Hits

KEGG orthology group: K08054, calnexin (inferred from 54% identity to ure:UREG_00619)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (582 amino acids)

>mRNA_534 K08054 CANX calnexin (Rhodosporidium toruloides IFO0880)
MRYALLPLSAIVALLVSAESAPQFTPSSVQGVFVEQFSSDVIGDRWSPSRATKEEKQGEV
FSYVGKWSVEEPTVLPGIPGDAGLVLKTKAAHHAISAPFDEVFDPKGKTLIVSYEVKLQK
GLDCGGAYIKLLTDSDEGIHAEEFSDKTPYTLMFGPDRCGSTSKVHLIVRHRNPLSGEVE
EKHLAAPPSPKLSKTTALYTLLIRPDQTYEIRINSEKVKSGSLLEDFTPPFNPPKEVDDP
SDSKPEDWVETPKIPDPDAVKPADWDEEAPASIPDPDAEKPEDWLEDEPTTVPDPDAQKP
EEWDDEDDGDWIAPLVPNPRCEGVSGCGPWKRPEIPNPEYKGKWFAPLIDNPEYKGQWKP
RKIPNPDYYEDKTPADLTPIAGVGFELWSMTDSILFDNIYIGTSESDLAQFVSETYAIKA
PLEAAQEAAETAKEEAESEKAMKKLNLGDEPDYKVDPVGWARYKAQQFFDEAVVDPKKAL
VENPLTGGVLGVVFASIIGMIGVLLSLVLPAAASTPAAQKASARVQDAASTASTKAQQVV
DEQVAPVAAAGKEKVEEVVEGVKTRATRAKKAAEEKQREESS