Protein Info for mRNA_540 in Rhodosporidium toruloides IFO0880

Name: 8908
Annotation: KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1976 transmembrane" amino acids 939 to 958 (20 residues), see Phobius details amino acids 975 to 998 (24 residues), see Phobius details amino acids 1245 to 1265 (21 residues), see Phobius details amino acids 1616 to 1638 (23 residues), see Phobius details amino acids 1640 to 1661 (22 residues), see Phobius details amino acids 1668 to 1689 (22 residues), see Phobius details amino acids 1695 to 1718 (24 residues), see Phobius details PF00063: Myosin_head" amino acids 35 to 562 (528 residues), 322 bits, see alignment E=2.4e-99 amino acids 650 to 781 (132 residues), 34.7 bits, see alignment 2e-12 PF00173: Cyt-b5" amino acids 1008 to 1088 (81 residues), 35.9 bits, see alignment (E = 2.1e-12) PF03142: Chitin_synth_2" amino acids 1259 to 1763 (505 residues), 747 bits, see alignment E=3.5e-228 PF13641: Glyco_tranf_2_3" amino acids 1430 to 1608 (179 residues), 27.7 bits, see alignment E=7.7e-10 PF13632: Glyco_trans_2_3" amino acids 1447 to 1659 (213 residues), 47.3 bits, see alignment E=7.5e-16 PF08766: DEK_C" amino acids 1919 to 1972 (54 residues), 52.4 bits, see alignment (E = 1.2e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1976 amino acids)

>mRNA_540 KOG2571 Chitin synthase/hyaluronan synthase (glycosyltransferases) (Rhodosporidium toruloides IFO0880)
MSNNPFKSPAMGAEVELDPISCPDLADLPPSIPSLSTDDLVPFLRARLLEGLPYTHITPR
VTLAVNPFQFVHATSDQALADWRAEYADTGADGVRGRLGPHVWTTAQRAYYHMCRTGQDQ
AIVLSGETGSGKTETSRQVLKALIDIAAPPTGKKGSKLSTSIPAAFFILDSFGHASTISN
SNASRFGRYTELQFNEKGRLMGLKGLEYSLEKSRVASTPAGERNFHAFHYLVAGAGPEER
QYLHLDAHTTFRFLAQSRSSASSVQSDATRFSQLKEAFKAVGFPKKAVASICQVLAAILH
LGNLDFHMDRSRNSDSAVIKNVHVLETAAEFLGVDPSELEYALTNKATLVGGEVCEVFLD
AEGAAANRDDLAATLYGLVFSWIGEFLNEKLCRDDFTTFISLVDFPGPIQHATSHRDGLG
VEAFCFNLAAERVQGYILEQLHEANKAEYKAEELSLPGLDARYTSNAETVRLLTHMPGGL
VHIVDDQSRRRGKTDATMLKAMSKRWSNHPSFSSRDGDEAQGRPGTFLVSHWDGQATYST
ENFLTDNSAAVSPSFVTLLGGSAPRVGADGRSTPGARDALSTGGSTFSFIRQLFASGALQ
TEVHPRSEQTLVAASQKVGPRRAPSTRRPRGRNPFSDSTGAGGEAEAAVGDEAAQGPTRS
VVQEVNDSITLLLNTLATSRSWFVLCLRPNDAQLPNQVDTKLFKHQVRALGLAELGKRLQ
GEWAVNLEIREWWERYGQVPVLAEEQQALGALMYRDKAVKVRELLGFSDREMAVGKTKVF
LSDAAFRYLEDFLRAEEPEEQAHIREILTRSAATTLAEDPYSPYAFPETPTLGAYNDDFA
KTTSTAALPLVDRKGASAFDDDEYEYKRKEYLGEDDYFSNPANQLVDEEQSLAPSGYTSS
RPMFDSRGMPEKQEMMSKDGKEGQETVEVIRMSSARKRWVALTWLFTWWVPSPLLSWFGG
MKRRDVRMAWREKLLINILIWLLCGSAIFVIAVLGPLICPTEHVYNTQELNDHSYTNDPS
HMLVAIRGEVFDFSSFAPRHIPGPSVISTTTIEKLGGRDLTDYFPVQVSALCNGVDGSVS
PWITLESANMSSSIQQVAKYHDFRAYLTDVRPDWYYETMVYMRYNYRKGFMGYSPGTIRS
EANKKGLNLAILDGNVYDFSDYIQNGGGGIKVPDGAAVPAGTSRQFMSDAIVDLFRTKAG
TDISKSFHSLNLPADVLQRQQICMRNLFFIGKVDNRNSAKCQFSQYLLIVLSCLMVVIVG
SKFLAALQLGRKRKPEDYDKFVICQVPCYTEGEDSLRACIDSLTKLKYDDKRKLLFIICD
GMIVGSGNDRPTPQIVLDILGADPTIDPEPLSFLSIGNGDKQHNMAKVYSGLHEAGGHIV
PYVVVVKVGKPTERHRPGNRGKRDSQMLLMRFLNRVHFDSPMAPAELEIFHQIKNVIGVN
PSFYEYLLMVDADTTVDPLALNYLVGGFVEDRKIIGLCGETSLANAKASWTTMMQVYEYF
ISHYLTKAFESLFGSVTCLPGCFSMYRIRTLEHKPILISDAILAEYGETKVETLHVKNLL
SLGEDRYLTTVILKHFSQYKLKFTRYAQAKTIAPDDWKVLMSQRRRWINSTIHNLFELLF
IDRLCGFCCFSMRFVILVDLASTLISPVTVAYIVYLIYMVAGEHKPLPTFALIMIGAIYG
CQVIIFVLHRKFEHIGWMLVYIVAIPFFSFVLPIVSFWQMDDFSWGSTREIVGEKGKRLL
VHDEGKFDPASIPLQKWSAFEEELWQQGDNESIGEIIEASKREHEAASAYGQPYGAASTR
DISPYRSGEFHARSGSQQHFGGAPSIGMLSQHELASLQGYQPHPGTLGGRRESTTSYFAA
NALAQAGMYPSASHDDYAAPARPSHTYSRSGDQLVSLSQSPSRAVSPAPAPLHQHGHLPS
DDQIAYDVQEYLRQADLTQVTKKKVREALEAAYGVRIEGDKKTLVNNVIVEVLGLE