Protein Info for mRNA_547 in Rhodosporidium toruloides IFO0880

Name: 8915
Annotation: KOG2385 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1231 transmembrane" amino acids 441 to 459 (19 residues), see Phobius details amino acids 519 to 544 (26 residues), see Phobius details amino acids 563 to 585 (23 residues), see Phobius details amino acids 674 to 686 (13 residues), see Phobius details amino acids 730 to 750 (21 residues), see Phobius details PF05277: DUF726" amino acids 515 to 853 (339 residues), 405.6 bits, see alignment E=8e-126

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1231 amino acids)

>mRNA_547 KOG2385 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MSADIWDDDGWEDMPVLRSSSTEPTASIFDSDLRDVDDASKKRSAGPAGRWNAPAPAKLL
DSPAAPGYSSMAGASATGNATGRLVDVGEEGATAGLREKGDLDEMDYTRLELDDDPDEDE
ISMRTQYLFNEDTSMTPLSQMQQTKTLLTEGQRIAYVGLCRLVAREMVQTLALAAKGAKE
LDPAKESCKNWANKIMGRLYRHMDVDSAEQRMIEQLAEHGVTAEDLVPSLVATYTVDNPD
YDPEAAEAAAKEADIALEAESARRTAGEAQRRDELPAESEGDVEERLGDLALGQGDDEAE
PNGYVKREVRKIERRTSEATLRSSPQSPRSPRTLRSPPETPSKRHMSTFDDFDDGGDIGS
ALDDPPAKSSSPPPDYPPAPEPSDPSPAVESTTPRASASALPAYDELDERKPDNFLQPLP
SSLPGVTQNLSSLDKTVTLDIRWTILCDLFLSLIADSVYDARSRVLLGKMAEKLGLEWLD
VVRFERRLTEALEIQEAVKDKEHEEVLEGRRLKDKHKRYLMMGLATVGGGLVIGLSAGLL
APVIGAGLGAALTTVGVTGTSGFLAGAGGAAIISSGATLTGATIGGKAMARRTRHVKTFD
IQPLHNNKRVNLFITVPGFMNGPRDDVRLPFSTIDPVVGDVLSVLWEPEMMGDTGNALKI
LASEVLTQAGQQVLAATVMTALMSALQWPMMLTKLSYLIDNPWSNALDRARQAGAILADI
LINRRLGVRPVSLVGFSLGARVIFFALVELAKANAFGVVQEVYLFGATVTASNKVWRQVR
GIVAGRFVNGFAMNDWVLGYLFRATTGGLQTVAGLRPIEHVPDLENVDITHLLDGHTTYR
SRMPKLLAYVGFKVTADHFDEPDLDPEAPDREVLTKEQEEERRLKKEKKGLGIFRRKKAG
GTDSTPMSRAPSIDEYDLPPRLSSSSSTSLNKAAPAVSTHGGRSSSSLSVATSGADAEAV
EEKQAPLSSQQPEQAQAAPALAAAVDSPQAPASPAVPSGFDLAKLRDEVAQLPKPSPERA
ASLPPQELPTVASTSSAARAAGESIQRTPSAPPPAEQPRTDLRELDQELDPRELLRRQWN
GEAVPAAASALPPVGPPVESAWASDTSLPDDHYAASSFSFPSVIPTITTSPSDAPSFTFG
DSNGFVHPSSDDRTPTHDMPSFTFGSSASFDDAASFTFGGSDGSLEPWAKGDSAKKASDD
APDPAGSFVWGGSGGGRDNASSTTLSTQNPW