Protein Info for mRNA_549 in Rhodosporidium toruloides IFO0880

Name: 8917
Annotation: K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1489 PF03159: XRN_N" amino acids 1 to 192 (192 residues), 267.9 bits, see alignment E=2.1e-83 PF17846: XRN_M" amino acids 239 to 321 (83 residues), 87.3 bits, see alignment 3e-28 amino acids 502 to 722 (221 residues), 251.1 bits, see alignment E=5.7e-78 PF18332: XRN1_D1" amino acids 763 to 947 (185 residues), 218.2 bits, see alignment E=2.2e-68 PF18334: XRN1_D2_D3" amino acids 951 to 1036 (86 residues), 77.4 bits, see alignment 2e-25 PF18129: SH3_12" amino acids 1195 to 1261 (67 residues), 80.2 bits, see alignment (E = 2.5e-26)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1489 amino acids)

>mRNA_549 K12618 XRN1, SEP1, KEM1 5'-3' exoribonuclease 1 (Rhodosporidium toruloides IFO0880)
MNGIIHNCSHPNDDDASFRISEHDIFLAIFNYVAHLFSVIKPQKLFFLAVDGVAPRAKMN
QQRSRRFRTAKEAKETLEKAKRRGEEIPEEEGFDSNCITPGTPFMARLSAQLKYFIAKKV
SEDADWRGVEIILSGHEVPGEGEHKIMEYIRLAKAQPGYNPNMRHCLYGLDADLIMLGLL
SHDPHFCLLREEVTFGPRGGKGKAKSLENQNFYLMHLSLFREYLDHEFSSLKSSLPFDYD
LERIIDDFILLNIFVGNDFLPHLPGLHINEGALNKLFEIYKRILPGAGGYLNEHGKLNTP
RLQLVLNELGGFERDQFEHEVADFGGGGGGRKGGRRGAEAAAEKARQRGQLVLSESQKHL
VDQVASFVLSNLATLPASSSSQLQYPNTLSSHRDRRFLSDFADALKLSVTYDEFNDDGEN
LVTIRFDDALVELAREEEDESDDVKGPLEGVSDESSEGEDSSEAEEIGIVHLSLDGRVRR
PLQVKKLNGATGGTDSPAPGLEKVEGEPEWKAAIRRVLNKYVKAEVARELTQAESEAEQE
KAIQEKMVEWKKDYYREKLEFAQDDQKAVETLVYRYIEGLQWVLRYYYSGVASWGWFYNY
HYAPKITDLKNVDKLSFEFDLGKPFRPFEQLMGVLPDLSSQHIPPAFRDLMSDPTSPIID
FYPTRFEQDMNGKKQEWEAVVKIPFIDEQRLLRTMSTREARLTKEEKSRNVFGESTKFVF
DDSVDVTYPSSLPGFFPDLVHNHTRLETFHLPTLEGGLSFRTGLMPGVLLGKDAISGFPS
LHTIPHTASLGFHGVNVFQSDSRRETMVVSIDNVFEGIKPENIARLIVGKRTYVNYPMLR
EALVDAVSDDLFRYEIDSNGLVKPIPHTQNEIYQWKRAADRIEHVYSKSKGCLIGHVEVV
VHARVLKGLRRETDGSMVKEWEDDTEDFALQATVSHITNEDVRYMERPPIPVDIEYPVGT
KVFFLGPLFYGVPAQVLDHKDDSLCIRIAFFPTDKSENGLFKARLEQVKDAAYHPSHVVA
RMVGMTGLTLSKITSSLLLYNSGDQRVNVGLNLKFEAKQQKVLGYSRKTESGWEYSTRAI
ELIREYKASFPEIIATLDTNRGDLTRATDFFSPDTVNERMKALVNWIKEKGVRDFEKVPL
FSEQLDKDAVQLIEKLEDKLTTTKTLDKIKQARIDNIPRQGVLKPAHSSIRLREQHFSLG
DRVITVAETGSVPLSAKGVVVGIQTSFIDVVFDVQFMGGTSLGGRCSNYRGATVTPSAVL
NLTEQQYATGQGVPAPAPAPTPVNKNARFRQGPLGGPAVLPAYGLPAGGFHPSPAHAASN
GRGRGRGGLNGNVQVMQNPARTVSPQTSFHAVATGKAPAAPAVSNGQPQSQQQRLGQTLG
IRGGMHPLRGGPPHLGRGGFVPHAGAFGVGNHTVPFQAATRGRGGGVAGTGAVPQARGGV
AIPPPAVLMQQGGARGGRGGARGAGRGAARGARGGAGHGGAAAPAAANA