Protein Info for mRNA_550 in Rhodosporidium toruloides IFO0880

Name: 8918
Annotation: KOG4391 Predicted alpha/beta hydrolase BEM46

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 305 PF00561: Abhydrolase_1" amino acids 36 to 147 (112 residues), 30.9 bits, see alignment E=8.8e-11 PF12146: Hydrolase_4" amino acids 39 to 153 (115 residues), 39.5 bits, see alignment E=1.6e-13 PF01738: DLH" amino acids 55 to 142 (88 residues), 21.7 bits, see alignment E=5.3e-08 PF02129: Peptidase_S15" amino acids 55 to 148 (94 residues), 32.2 bits, see alignment E=3.6e-11 PF00326: Peptidase_S9" amino acids 57 to 145 (89 residues), 30.9 bits, see alignment E=7.7e-11 PF12697: Abhydrolase_6" amino acids 59 to 279 (221 residues), 33.6 bits, see alignment E=2.6e-11 PF05448: AXE1" amino acids 93 to 146 (54 residues), 34.9 bits, see alignment E=2.8e-12 PF08840: BAAT_C" amino acids 98 to 141 (44 residues), 21.1 bits, see alignment 1.1e-07

Best Hits

Swiss-Prot: 41% identical to AIDA_ACIBM: Quorum-quenching protein AidA (aidA) from Acinetobacter baumannii (strain MDR-ZJ06)

KEGG orthology group: None (inferred from 45% identity to mmi:MMAR_0385)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (305 amino acids)

>mRNA_550 KOG4391 Predicted alpha/beta hydrolase BEM46 (Rhodosporidium toruloides IFO0880)
MAALPPRRDIQIPFGNARMAAWLYPSPVASSTKPGPAMVCGHGLGAVKEMGLDNYCELFQ
KEGYTAVAFDYRGFGEPTGSEPQILDWNMQQDDWAVVLEYVRNLPEVDASRVGIFGTSFG
GGHVIAVAAKDKRVAAAISQCPFTSGPHSAATLGWYAPFALTALGVRDLLFGKKGDYVPV
KLAGKPGEVALMNAPDVESGYKRLIPPSLEARGLPITVAARAALQIPFLRPGSYAPQVEC
PIYFAVCRGDTVAPAGPTRGWAKLAPKGVVKEYELGHFSIYVDEGFEQASKDYVEFLRQV
LPVRQ