Protein Info for mRNA_563 in Rhodosporidium toruloides IFO0880

Name: 8931
Annotation: K05287 PIGF phosphatidylinositol glycan, class F

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 349 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 49 to 69 (21 residues), see Phobius details amino acids 89 to 109 (21 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 214 to 236 (23 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details amino acids 292 to 315 (24 residues), see Phobius details PF06699: PIG-F" amino acids 79 to 309 (231 residues), 138.5 bits, see alignment E=1.5e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (349 amino acids)

>mRNA_563 K05287 PIGF phosphatidylinositol glycan, class F (Rhodosporidium toruloides IFO0880)
MAARKKASAAATPSQTASTSSAASRVSPTPSSSSSHPRDPLPFAHFLPRLPLQLVAVLFS
CIASCSVTVPDKSIPAPTRFVASLVQDPLSTLPLLCGLLAIVQGWFGYWARSCRLEAEKV
DKDGAAKADTQLKTRTESKSFRGSLGKLWDNALKGEAPHQRLFKKRADGQSAFASIDTRF
VPQAVMITLGATLVMHGAIVLLGAPLTRNVTHTFLLALLLSVLAVLPLSVALPPVATTNG
RFAWLRLVSSLSPNDNLELVLLAPAVGTLVGAWTGAFPIPLDWDRPWQKWPVTPIVGALA
GHAVGSLVGFAVVAWRKTLEAAVDVLQEVQQNEGMQRKTGGMKETRKTK