Protein Info for mRNA_564 in Rhodosporidium toruloides IFO0880

Name: 8932
Annotation: K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 576 transmembrane" amino acids 37 to 57 (21 residues), see Phobius details PF01532: Glyco_hydro_47" amino acids 94 to 568 (475 residues), 509 bits, see alignment E=6.9e-157

Best Hits

KEGG orthology group: K01230, mannosyl-oligosaccharide alpha-1,2-mannosidase [EC: 3.2.1.113] (inferred from 55% identity to ppl:POSPLDRAFT_111281)

Predicted SEED Role

No annotation

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.113

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (576 amino acids)

>mRNA_564 K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase (Rhodosporidium toruloides IFO0880)
MAKRKDVTKAVKPAAAPAPPPSSAPRTPPPRSKPSPLRSFILLIRIASCCFALYVLWKRM
HPPKEEAELAEDDKRVRVEEIEVDEVRRQAVLEAFKHSYSAYERDAFGFDDYHPISHHGS
NMSPAGPVGYFVIDSLDSLLLTNSTEEYKRARDWVKKLSFDLDDKYHTFEITIRVLGGLL
SAYHLSGETDQMLLDKAIDLADRLLPAFDTPSGLPLSFVNLKTRQGIADKDNRGWTSVAE
AGTLQLEFKYLSHLTGKKIYWQKVEKVMDVIRKQPNKDGLVPIFMRPDTGSFVFSDIRLG
SRGDSYYEYLSKQYFQTNRTEPIYLDMHNEAMSGIKKLLLKKSATKGLMYVSELLPRRKA
EGTFEMVDTPKQDHLVCFLGATFLLGASNGNTLPLPPDESTLSESQLDDWVAGKGLIRTC
VDTYTSSKTGLAPEIVNFYLRAADAKAAGRDWFINSRKLTYPEPPIDARNILRPETAESL
FVAYRVTGDPIYRSWGWTIFQAFEKHCKLPAGGYASVRDVDALPVVHEDRMETFWLSETL
KYLYLLFSDKDLLPLDRYVFSTEAHPLPVFTPTRFQ