Protein Info for mRNA_576 in Rhodosporidium toruloides IFO0880

Name: 8944
Annotation: K20182 VPS33 vacuolar protein sorting-associated protein 33

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 656 transmembrane" amino acids 595 to 617 (23 residues), see Phobius details PF00995: Sec1" amino acids 38 to 641 (604 residues), 364.9 bits, see alignment E=6.6e-113

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (656 amino acids)

>mRNA_576 K20182 VPS33 vacuolar protein sorting-associated protein 33 (Rhodosporidium toruloides IFO0880)
MQARGPALPQSAAIDTDLLRLVGSTALQQKLDTIVGPKTLILTPRLAGPLGLVTEVGLLK
NNHAVTKMYWLEPGALSQTERNVVYLCRPEVRWMRIIAEQIRADPQPNQHNYHLLVVPRM
TALCTTILSDLGVLGSLEIQEFQLGLIPLEKDVLSLEYEDVWRKIELDGDNAAIFDLAKA
IMTIQRAFGPIPRLIGKGDSSRRLVDLLKRLRREQPASTPSSAPLANGTIDSMVVIDRQV
DVVSALCTQLTYEGLVDEVVGIKHSHVDVDPNLLNPAPAASTSTPSQASFGTLPPRKRKH
LLTATTDPLFAELRDKNFAVVGTILNRTARRLNEDYEKRHQAKTAAELRQFVGQLGGLQN
EHQALRLHTSLTEQIMALTGTDEFNVALEVQQNLVAGVGLATQENSIRDLINQEAPVKTV
LRLLSLYSIVSGGIKPKVLEEFKRDILQAYGFDHLPLLISLERLNLLTRPPPSSRSTPKP
PFVLSRKPLRLIVDDVDEQNPQDPSYVFSGYAPLSVRLVQCALAGGMGGAGSKIGAAIPG
VGAGATGGMAGVAMGPAGLNGWKGVEEVVKALPGATIDEWQKIDDGPKRLAPGELPTTIV
CFLGGITFAEVSALRLLNRQMPSRNLLVVTTDTVTGGSLLTSLMPEHTRNPVLPSA