Protein Info for mRNA_582 in Rhodosporidium toruloides IFO0880

Name: 8950
Annotation: K02876 RP-L15, MRPL15, rplO large subunit ribosomal protein L15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR01071: ribosomal protein uL15" amino acids 68 to 218 (151 residues), 141.5 bits, see alignment E=8.7e-46 PF00828: Ribosomal_L27A" amino acids 93 to 219 (127 residues), 125.7 bits, see alignment E=9.6e-41

Best Hits

Predicted SEED Role

"LSU ribosomal protein L15p (L27Ae)" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (310 amino acids)

>mRNA_582 K02876 RP-L15, MRPL15, rplO large subunit ribosomal protein L15 (Rhodosporidium toruloides IFO0880)
MSLTRLLQRLSVAHSPAQPARAACAHLSTAVHRPQATSSRAPYTALDARASSRGARAART
YATEVSTLGNLSPAPGSTHSRKRVGRGRGSGLGKTSGKGHKGQKARSGNGKPAAHFEGGQ
TPLTRRYPKRGFTNINKENLVALNLNRLQHWIDRGLIDPSMPITMKELKVTRCIHGIKDG
VKLLGDGAQYLTTPNLHITVSKASESAIKAVEKLGGTVISRYYNRLTLRALVRPDMFIKK
GKKIPRNADPITRRDLVYYSSEEKRGYLWVRAQADKTMAEMEAAEAGEAGEASEVQPVEV
KQAKQPEVSA