Protein Info for mRNA_587 in Rhodosporidium toruloides IFO0880

Name: 8955
Annotation: K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1112 PF00752: XPG_N" amino acids 1 to 97 (97 residues), 110.2 bits, see alignment E=6.2e-36 PF00867: XPG_I" amino acids 929 to 1012 (84 residues), 83.8 bits, see alignment 9.2e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1112 amino acids)

>mRNA_587 K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5 (Rhodosporidium toruloides IFO0880)
MGVQGLWSLLQPVARPVTLETLRDKRLAIDASMWIYQFQMATRDKKTGDTLQGAHIMGTF
RRIMKLVFYGIKPVFVFDGAAPSLKKRTLEKRRKRKSGAGRDLAKTARELLSAQLRGHAV
ERELNRRKKSRKGKEKATDEVDEDAGTGDELGENVAYLEDLDAPMSQDSPAKQPSPVKAD
PPASPATPTQTPRKKYVYRDEYALPKIDGPLESRADISDTRIATEEELREFIEDLRPEDL
DINSKFFENLPTEVKYEILGDLRIKTRQVNHRRVQNMRGSNAHDFSRAQIDHLMERNAYT
QKLLSVTDELGKSALAIPTRVAGQRNREYVLVKQDVSKGGGWVLGVKNPEMSSNQPITID
STTDDSVSTHTDTDEFEEVGFDSPEKNPVGLPTPDREARRALAEEAVRARLAAQVPLPAA
DPYLDQPVASTSRAAGLFQREGLADEEDAALQQALYESAQTAPPLPLGGRKTQSSSTGRT
SKNGGARARPIPSSSRIAISVTIPPPPTAPPLDASAATGNDTDDSMEYVDIPPQPTNGKP
AAPPAANGTVVLSDTDDTDAFEEVSVAEPRQPVAASIQPPPAAARAPSPPSPRARSPSPP
VIASAQPRTLFDSILPSDSDSDADTEASPKKRDSRALPPAQPLPRPQPRQRSPPAFARLS
PSPDPFERFEAGEPAPGIQSHDFALEPIETTSSAAASHVVAAHKGFEVDTQPRPAADRLP
KVAVEPVVEAAPIRVDSPTDLPDPLPPLEKACEAVETTEMAVLPDTVAQLPSPDLPPNPP
ITETTAQPPARKQPAPLFNAQDAVADPPAAEPANAKATDEEFFSDWSRSPSPSPNKRASA
SASNAQRDAEEWYDELAENEMDEAVAAMEREEEAYANMLSELRNEKIEAMRQEAERDVAR
LTAQRNAEARNADSVTRQMSTDIREMLILFGIPFVDAPSEAEAECAALLARQLVDGIVTD
DSDVFLFGGSRIYRNMFNEAKYVECYLLSDLEREIGLDRGKLVRLAYLLGSDYTEGLPGV
GPVVGRELLEEFPGKDGLKLFKAWWDKVQSGQDTEKDTNTSWKRRFKSQHRNLILDKGWP
STEVAQAYFRPVVEESDDCFSWGFVDLDGLRQ