Protein Info for mRNA_613 in Rhodosporidium toruloides IFO0880

Name: 8981
Annotation: K10631 TOPORS E3 ubiquitin-protein ligase Topors

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 PF13920: zf-C3HC4_3" amino acids 84 to 132 (49 residues), 37.3 bits, see alignment 3.9e-13 PF00097: zf-C3HC4" amino acids 87 to 126 (40 residues), 31 bits, see alignment (E = 3.8e-11) PF13639: zf-RING_2" amino acids 87 to 126 (40 residues), 33.4 bits, see alignment (E = 9.4e-12) PF13923: zf-C3HC4_2" amino acids 87 to 126 (40 residues), 30.3 bits, see alignment (E = 5.9e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>mRNA_613 K10631 TOPORS E3 ubiquitin-protein ligase Topors (Rhodosporidium toruloides IFO0880)
MPRADDSAPSKRQRTVSPSPHSRRASYSRASRSPEDTRSRRRNPLEGFDDEAEEADDGRD
RRDLSDGERGDEPEDDQGEGEDEEELCAICLSPIENRTVIFPCHHGQFCWQCIRAWTDQS
RKCPLCLGPIEHLIHNIRSSKDYQTHYLLPLHAIASTSSAADDLLPPRGTRRPAVNPTLP
RHALYGRNRYSSEARLNNLDETTWREREEERALERRRFIYREGLYAKHVASNRYTGFKPF
TPQTFASNPDLKARVIKFIRRELQVFPAVDVAFLTTYLVSIASQLDLRSAAAIRLISDFL
SEQDAQHLVHEIVTFARSPFTSLEGYDRFVQYGRPTREVPKAQELEEMVHDPEELSRQAP
RFEEHMRRRRDEEAERERRKPRPIPPMSASLPQRPSEDVRRATDEAPQRPSIVSSPSQSS
KVWWLPSSVSFACPRTRLARSRRAVHGLISSLQLEQARSSGTRQIRPSSRPPIPWRLPPD
SLAESKSVSGPTAPFSFACKAARPKRQPVAEPFSFTVACSFTTVTLAKTVEISSPRQLQT
LPFTLSVSHETPPPPVDPELRDAISLSVPVLSANPSPRPASPAHDQPSSAKADPAQQQPP
QRPMLNIFGAARRILGNGRVVTLSGDGKASLQTDGTGRKDGALAISGRGRNNGKGRAVRP
IEQEPYDAAPSRRPASPAAKNLLARLGGIAPSPAPSSTSTASANAAEPSSSQESLRAKLQ
ARLTAEYRQALASKTNGPSMSSTLGKTDLRSMLQQRLQAEKALAHEDLVRSRASASLAAA
RAASTTAQTDSLASFGAGLLGSSLDADGQTTYSQATRDLLMARLEEEKLLAADELAGGFA
VDFGDSYELDYGDYGDTTRVLPPEPEQASPPPVEEPNHPSKSESTLKAALLAKRQAAVED
ELKKKSGELKEKLMRQKLMQARAKAQGGKAAVSGTADAGGGTEGGA