Protein Info for mRNA_638 in Rhodosporidium toruloides IFO0880

Name: 9006
Annotation: K02947 RP-S10e, RPS10 small subunit ribosomal protein S10e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 151 PF03501: S10_plectin" amino acids 3 to 94 (92 residues), 145.8 bits, see alignment E=1.6e-47

Best Hits

Swiss-Prot: 58% identical to RS10B_SCHPO: 40S ribosomal protein S10-B (rps1002) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02947, small subunit ribosomal protein S10e (inferred from 72% identity to scm:SCHCODRAFT_70772)

Predicted SEED Role

"SSU ribosomal protein S10e"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (151 amino acids)

>mRNA_638 K02947 RP-S10e, RPS10 small subunit ribosomal protein S10e (Rhodosporidium toruloides IFO0880)
MIIPKADRRTIYENLFKDGVLVAKKDYNAPKHQELDVKNLFVIKACQSLTSRGYLTTHFS
WQYYYYTLTPEGIDYLREYLHLPAEIVPATYKKQVRAPRPGQAQRPEGAYRAPRGGDQEG
YRRREGAKEEGAGDFRPRFAGVGRGGPRQEA