Protein Info for mRNA_646 in Rhodosporidium toruloides IFO0880

Name: 9014
Annotation: K09885 AQPF aquaporin rerated protein, other eukaryote

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 133 to 162 (30 residues), see Phobius details amino acids 182 to 204 (23 residues), see Phobius details amino acids 231 to 252 (22 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details PF00230: MIP" amino acids 49 to 293 (245 residues), 155.2 bits, see alignment E=1.2e-49

Best Hits

Predicted SEED Role

"Aquaporin Z"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>mRNA_646 K09885 AQPF aquaporin rerated protein, other eukaryote (Rhodosporidium toruloides IFO0880)
MSTTTPTTRVTSPSSQDQPDRESMHSVLNFRIRKPNYGPRHLAVKNHAVAAIGEFVGTCL
FLIFAFGGTNVANMAVSDVNSSAQPDQTGATAALPNTSNLLYIAFSFGISLTVVAWCFYR
VSGGLFNPAITLGMFLVGAMSPVRAVILAFAQILGGITGAAITEALLPGNLMVRTTLKTG
ISVVRGLFIEMFMTALLMLAMYVARRQPRVSPANASAHSLLLATEKHRGTFLAPLPIGLA
LFCSELVSVYYTGGSLNPARTFGPCVVQHKFESYHWLYWVGPALGALVASGFYHLIKYLE
YETVLADDDSDDEDEGDEEEQVASPQQTQAPVLQIATDAAGAPVVQAVPPTGATGGKAKG
QQRYVVEGTGLAAALLQRMATEQHQQHRTGPHARGRQTPLTNPAYDQRFERLESMMSRIL
DAVEQGRGSGSDASVATAAAGHSPSAEEKV