Protein Info for mRNA_648 in Rhodosporidium toruloides IFO0880

Name: 9016
Annotation: K03424 tatD TatD DNase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF01026: TatD_DNase" amino acids 63 to 363 (301 residues), 131.7 bits, see alignment E=1.6e-42

Best Hits

Predicted SEED Role

"Putative deoxyribonuclease YcfH" in subsystem YcfH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>mRNA_648 K03424 tatD TatD DNase family protein (Rhodosporidium toruloides IFO0880)
MLLRPLRASSTLLAPLLTRHMSSTPVSASSSRSGKSRTPHEDVLVLPIHNDLKELEDRDL
LLVDTHTHVLSTWLAYKEKYPAGKHESIRAFVESTLQADSSNRISKVVDVWCEAPPVANW
REVVEDLSALDNLNYRFVIGAHPDVAQHYTDEMERTFVEAHKHPHCVGWGEIGLDYYNQP
ASEVQKEVLRRQLRLAVQSGQDKAITIHTRKADADILPILKEEVPKEKRLHIHCFTDAPE
LADALLEHFPNLFIGITGVISYASNVNTAEVVRRLGKTCSPDSPAGLRILLETDAPYLAP
ANLPSKQIGMTSKQRYPFCHGGVLPWTAEFVAKVLNEGKEGGEKLWSTVDVLRQARENAK
KCYGI