Protein Info for mRNA_687 in Rhodosporidium toruloides IFO0880

Name: 9055
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF00172: Zn_clus" amino acids 49 to 86 (38 residues), 37.1 bits, see alignment 1.4e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (375 amino acids)

>mRNA_687 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MARAHRSSSSERSDTASTRASSLAKSSSPLASRSTATGAGLAEDGLADRSCEMCRRRRVR
CSREIPTCSNCAKRGEECSLSEPQQESEVVLAPPAKKAKRKAGDGAKETATMTSVKEKEN
LPLRRISPPSPVSRSQSIQMPPPTQREATPEQEEVPPVAAEPAPRPPRQLFPSFPDGAAS
YRTNKVASDTREALTRTVTHGIDAPFEKIALQGVNIAALAAELRTCDHTYQAPGGPNPPM
LFPSPSSNQDVPQPSAQQAHTCISTYMVRVEPSLQLFAPTHARQAFLAGGMGMWTTGEVP
NQRGWLACYLAALAHGAMSMTKEEWHLSGRFEAREATAREWLLEAGWALATEYFTRKPTM
AGRLPRRSGTHPSSS