Protein Info for mRNA_698 in Rhodosporidium toruloides IFO0880

Name: 9066
Annotation: K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 278 PF04157: EAP30" amino acids 6 to 257 (252 residues), 222.2 bits, see alignment E=3.2e-70

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (278 amino acids)

>mRNA_698 K12188 SNF8, EAP30 ESCRT-II complex subunit VPS22 (Rhodosporidium toruloides IFO0880)
MARRAAGLSSLQRHLDSADHYTTLGTSLAAQQASTLSSQLSTFQSALSRFSSSHRAKILS
NPEFRTHFSALCAELGVDPLGGGSKGLWDKMGLTDWYYALGVQVVDVCLRARERGGGLVA
LDEVIREVQKLRSGKHVKTVGAPKAAGPTPLEASSTSTSSEITEADVQRAIEALEPLGCG
YSILTVGSKKVVRCSPGQLDRDSLVAVEAAGSTRRGAVTAEELQAYTGRDGIKWDVERVE
RALEKAVMDDGMLWVDEQAGDAIYVQRDYYAPGLFVME