Protein Info for mRNA_699 in Rhodosporidium toruloides IFO0880

Name: 9067
Annotation: K20289 COG2 conserved oligomeric Golgi complex subunit 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 856 PF06148: COG2" amino acids 67 to 195 (129 residues), 83.6 bits, see alignment E=1.4e-27 PF12022: DUF3510" amino acids 691 to 818 (128 residues), 95.5 bits, see alignment E=3.4e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (856 amino acids)

>mRNA_699 K20289 COG2 conserved oligomeric Golgi complex subunit 2 (Rhodosporidium toruloides IFO0880)
MAEDALQDPFNPAQPTTASPSRPTTLSLPSKPALSHRPSFTTVLSTADLSAAVEGQVDLP
SAPPLSHEALAGDDFDASEFLLARRHTPLDDLRSELRGYLATLRTSLVGVINEEYEAFIG
LSLGLKHAAVSQSLATIHRPVLSIRGEVMRVKDELENMRSEMSGVLDERKEVREMKAMMR
RLLATEEAVDKVEGLLKPAGEADKSRSLDLAVDSPAKRLERIASEYTHMLYLVERAGNLP
FVKALQPRIDRVTSALRTDLSSLLSAILAGSPSTPTYREELAIALRTFLSLGLVSQVEDI
VRRGVVRPFVKHAIHRDALSSPIDSPALSSHPAHVPPSYRIEPIAVPPAHREGRDAAPLT
ALYNRILAFVSHDCGVLLDVAERGLASQHDRRSVDTDGAVSKDGDAEKVEGFEILTNALF
DETGTALMGELGGVIYAAGRPTVFHQNYLLTTVFVSRIESLSPTLARLTSLRSHSTYTTL
LKRFQLPVYFQLRFKDAVTSVERAFEVGQASGGGGAEGFVMSESEAAFKALRRCWDEDVW
LEELAGRFWRLTLQIVSRYRTWLNDRVPRYVLPTSASSANLAAAAPGSPASRASFDGDRS
RLAASAGNSRPATPGPASGNDEVSEETTLRQLTVLIADAQTMERKVLELFKERIRGRLPA
DVRDEAGDIMRDSLSSVTAIVPSLSSQITTILIKRCAEHLKLVRSVASQVRASTRKGPSE
PSYFVHNILKEVRAYLGGPGRVVEEELRRRLATVVVEDIAGRYTSILSTQKKTEDSLRWL
KKGRQGLSFFGRAASSASPADDGSSDDDRVKMQMQLDVETLAKDAEELGVDVEGCEAFRT
LRRAAAGEVKEEEGKK