Protein Info for mRNA_714 in Rhodosporidium toruloides IFO0880

Name: 9082
Annotation: KOG1201 Hydroxysteroid 17-beta dehydrogenase 11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 340 transmembrane" amino acids 160 to 175 (16 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 319 to 334 (16 residues), see Phobius details PF00106: adh_short" amino acids 47 to 244 (198 residues), 138.1 bits, see alignment E=2.7e-44 PF13561: adh_short_C2" amino acids 53 to 243 (191 residues), 116.4 bits, see alignment E=1.6e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (340 amino acids)

>mRNA_714 KOG1201 Hydroxysteroid 17-beta dehydrogenase 11 (Rhodosporidium toruloides IFO0880)
MVSNEDASAAIGELIKTQSAEVRQSRASIPLNIDEAWACGEADLKGNVVVVTGAGSGFGR
GFSLKAGQFGAKVVLSDLRKESVQKVADEIVSKGGQATTIACNVTKWEDQVKMFRHARDT
YGHVDIVVANAGIAEPPTARFLDFRTENGEPTKPALPTIDVNLIGLMYTVKLAFFHLREN
PARDGKSIVLLGSMASFLGIPGAPAYGATKHAVLGLMRSLYFDARVYGIRINTVHPFFVK
TNIFGLIPTLLLTGIPLPTVDDVVAAMTAAACKTSSNGSAFVVDFKGILEIPYSASASEE
NGGYYAIFAQRAQGALSLGKYVFDIVAAFAGVLSGRRPLQ