Protein Info for mRNA_718 in Rhodosporidium toruloides IFO0880

Name: 9086
Annotation: KOG2776 Metallopeptidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 PF00557: Peptidase_M24" amino acids 21 to 230 (210 residues), 64.8 bits, see alignment E=4.8e-22

Best Hits

Swiss-Prot: 39% identical to EBP1_SOLTU: ERBB-3 BINDING PROTEIN 1 (EBP1) from Solanum tuberosum

KEGG orthology group: None (inferred from 44% identity to cne:CND00750)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (383 amino acids)

>mRNA_718 KOG2776 Metallopeptidase (Rhodosporidium toruloides IFO0880)
MSAAAQKPAQEVALPTATLDKYKAAAGVVESVVKQLISKATEGANILELCLEGDKLIEEG
VKPLYNKVKGTPKGVAFPTTVSVNNVLQHFSPVPSDKEGAAQTLKKDDVVKVVVGAHIDG
YPVVSGETFIVGASSPITGTRANLLQAAYQAGEIALRAVKPGVRNWEVTEAVKGLLKEYE
ASGVKGVEGVLSHQFTQNNLEAKKGLVAFPTAAQRSDSDNAYTFEEGDVYGLNIIVTDGE
RTPKAADTSRTTIFSKTQSTYLLKMKTSRATFSELSQKAGSFPFNLRIMEDETRARMGVR
ECVQHNLVRGYDVSTTEKAENLAAQVFLTFTVTKTGAARLSAAPSFYSADKVQSDVQVSD
AIKETLARPLKPKAQKKKKEAAK