Protein Info for mRNA_738 in Rhodosporidium toruloides IFO0880
Name: 9106
Annotation: K06606 iolI 2-keto-myo-inositol isomerase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"3-dehydroshikimate dehydratase" in subsystem Quinate degradation
MetaCyc Pathways
- quinate degradation I (2/3 steps found)
- quinate degradation II (2/3 steps found)
- shikimate degradation I (1/2 steps found)
- shikimate degradation II (1/2 steps found)
- petrobactin biosynthesis (1/10 steps found)
- superpathway of aromatic compound degradation via 3-oxoadipate (4/35 steps found)
- superpathway of aromatic compound degradation via 2-hydroxypentadienoate (5/42 steps found)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (708 amino acids)
>mRNA_738 K06606 iolI 2-keto-myo-inositol isomerase (Rhodosporidium toruloides IFO0880) MPALPQAVPFGICSRSVGRSAAGHNILDILDECAKAGLWTIEVAYECLENYAKSLTSFSN PRDALREAARRVNQRARSLGLVCAVLDAFEGYEGLLDREQHDHLVDDFKFWVELCGIMGI EVVQVPASFETCEKAMGDVEVIVNDLRELADIGLSVSPPIKIAYEPLGWSTYIDTWEKAL EICHRVDRPNIGLCLDTFHVASLLWASPETVNGLREGGAEALKASLDRLRKISPEDIFLY QLSDGTLLDPPMPDSPFTEPDIHHLFSWSMHGRPFPGEGYFPVAEISEAVFATGFRGVTV MEVFDDDAFSKCSTLLAERANRAVGSWVRLSKELGLAPFRPPTPKGQNKLGTCTVNIGHY EHYSLEDKLYACAAVGHQAIDLYEDDFLHYLSLQPGANKANLWEPIPAHLHAAKKIGDLC ASLGMEIICFQPLIDVEGLVNQADREAAVERVKNYFPFMRALRTDCTYITTNRRYDFDNI TGEVSVIAADLALFADLAADYARADGGPMIKIGYEHLSWGSHINTFDKTWEAIQLANRPN LGFVFDTFNFLAVEFADPYNPVGHGRKHDTLEESIRVVRSRLAKLVKLIPGDKIYVCQVA DAKLVDPKSLKAPTHPDKAWTPDHEPPYRQWSSSHRLFPNESFLGGYMPVADCLAAILAT GYKGALTLEVFNDSLFEKGPNVVAEHAKRSYAGLEACIAEAKEITPFW