Protein Info for mRNA_742 in Rhodosporidium toruloides IFO0880

Name: 9110
Annotation: HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 422 PF08243: SPT2" amino acids 306 to 417 (112 residues), 80.1 bits, see alignment E=9.1e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (422 amino acids)

>mRNA_742 HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784 (Rhodosporidium toruloides IFO0880)
MNFNELLKKAASTTAQQQADFAKQEKERLAAKKAAEEAEARKRAEQERFAAQRRKEREER
ERKEREAAERKKAALPKTMNLWQLKQERKKLGLDPDGKDDHLLEGKAKNGTAKASASSTS
SAKGKGKAKEKTVVSHREDKARKRQDALFRDDEPSSGGFALAKLQQKLTAKDESPSRPAA
STSRPTASSSATTKPKSITGKSSAALSRTSSTSSTGSAPDAAGGSVRDRLKAGFSDAPQK
LNVIKRDNRTIEEIERDMKLKKAKEAAAKNGGSASITSAAGPIKTSKSTSRSPAPARPAS
NPKPARRARTATPSDEDDDESDMSTSSTEQRKRKRSRYEKERGLNSAQRDAIWSLMGRNR
TADVARERAFDSDDSDMEATGADVLLEERRAARLAAREDAEEQERLRRYAEEKKKRKIQS
SK