Protein Info for mRNA_743 in Rhodosporidium toruloides IFO0880

Name: 9111
Annotation: K08493 VTI1 vesicle transport through interaction with t-SNAREs 1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 211 to 229 (19 residues), see Phobius details PF05008: V-SNARE" amino acids 27 to 91 (65 residues), 58.7 bits, see alignment E=6e-20 PF12352: V-SNARE_C" amino acids 147 to 204 (58 residues), 55.8 bits, see alignment E=4.5e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (287 amino acids)

>mRNA_743 K08493 VTI1 vesicle transport through interaction with t-SNAREs 1 (Rhodosporidium toruloides IFO0880)
MDSSVFTEYETDLTTVLQGVADKLGGEAVKLRGEERRALLRRVERELEEADEIVEQMEIE
MQTADAMDKQEMQNKLRAHKASLGRHKADLKTLLSSADRDDLLGGSAGRADHVAIEMDSR
SESPSLGQAQAQRARLMSATDKLAEGQRRLEDSQRIAVETEDVGAGILRDLRTQRDTLEH
SRDTLYEADGSIDRASNTLRKMIRTAYQQKAISYAIIGLLVLLMCGVLDSRSRPAYPSFP
QSVCPRLQAVPLRRPRRATMLSQQSLQQSPGLHAWHFAPSKRWLGAP