Protein Info for mRNA_778 in Rhodosporidium toruloides IFO0880

Name: 9146
Annotation: K14548 UTP4, CIRH1A U3 small nucleolar RNA-associated protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 transmembrane" amino acids 821 to 841 (21 residues), see Phobius details PF00400: WD40" amino acids 763 to 788 (26 residues), 18.6 bits, see alignment (E = 2.9e-07)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1025 amino acids)

>mRNA_778 K14548 UTP4, CIRH1A U3 small nucleolar RNA-associated protein 4 (Rhodosporidium toruloides IFO0880)
MNLELDGDDVAFDQPSPSTASPQPSSAAAVNGSNSRRRKGLPVHRCRFPDWSPAGVSALA
ITPESFDASVLGFGGNSGERGVLAVGRANGDVELMLWGGHQGWVSWRTLPSSFPLPKQRN
SRKPTSLLSHLVWTHQATLSSNDLDLYEGDVEGAEQEIRRLQREGVRLFGVGGVGSELVE
WEWGGPGSGRAVGMVKSTLPTLPPIFAVAASRSSSSLAIACEDSTIRILNILDGELELVS
KIEVGGPGKVRALSLAWGPPVEPVSKGKERESSPSGSSLPSHFVTPSESYIVAGCSNSTI
RRFDVPTSGSVDGVWRGSLRMTLDRLKGEHTVVWTVAILEDGTVVSGDSMGNVKFWDGKM
GTQTQSFRAHKADVLALALGSDGTSIFTSGVDQKTVEFRLVTVASSRVHGVPAGRWIQAS
GRRLHSHDVRAIVISPPYSFPLPSPAPSAQPKKAIVPIMTSAGLDLSLILTAVSPASSTA
ATSKKRTALPNPVSDVPSTEFESTVHRRAAYVPQRGRPFAVAAGTGTPDAPRLLVCRRDR
GVGIWRLEDPKRAGSTLGLGANAAPLKKARWGRKKFALGLDAEEDEEEEDVGTTGYEKVA
ELELKMQTNLVASAVSHDGKWLAVSDLYETKLFRLSWRGGELVPRRQKSFNDALVAGLPN
SSLGTGSSCLTFTKDSQRLVLSSAFGSAVAVVELPQGKDEDFDVLSVFGEAGSSAGKAKA
NGLPNGRGKADEDVVMNGASDTEDDSEDEGDAAPATKRVPSTIVCLAVSSDSKFLATAES
DRTVRIFDLVSQKLHTTLPTPPAVPTWLSFAPSAPTSEPTLIVALPSNALLFFGLTSLRF
HPWGLPLSSRKYNTLMDIREPVLGIAFEPRRSDAAIANGGDDQQHIHPSRRAAVRNAATA
NPESNVAVVWGANWVAKIDIEALRRGADAKVEVNGQAKRKNKKGVPERREMDRKRAREED
DDLVSATATTKDDPKPLDIRVTRRYQPLVLFDFVGQGELVAVERTWFDVARELPEAWVKS
GQFGT