Protein Info for mRNA_781 in Rhodosporidium toruloides IFO0880

Name: 9149
Annotation: K02910 RP-L31e, RPL31 large subunit ribosomal protein L31e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF01198: Ribosomal_L31e" amino acids 18 to 98 (81 residues), 121 bits, see alignment E=1e-39

Best Hits

Swiss-Prot: 57% identical to RL31_CYAPA: 60S ribosomal protein L31 (RPL31) from Cyanophora paradoxa

KEGG orthology group: K02910, large subunit ribosomal protein L31e (inferred from 67% identity to cci:CC1G_07500)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (127 amino acids)

>mRNA_781 K02910 RP-L31e, RPL31 large subunit ribosomal protein L31e (Rhodosporidium toruloides IFO0880)
MARGQSNTERKTRSALTDVVAREYTIHLHTKVHGKGFKHRAPSAVKAVRTFAQKAMGTKK
VLLEPSVNAAIWGKGIKNVPHRLRVRLHRKRNDDESAKEDEKLYTLVSVVPTTNFKGLNT
TVVEADE