Protein Info for mRNA_794 in Rhodosporidium toruloides IFO0880

Name: 9162
Annotation: K14834 NOC3 nucleolar complex protein 3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1012 transmembrane" amino acids 494 to 513 (20 residues), see Phobius details PF07540: NOC3p" amino acids 438 to 547 (110 residues), 81.3 bits, see alignment E=5.8e-27 PF03914: CBF" amino acids 826 to 1001 (176 residues), 59.5 bits, see alignment E=4.4e-20

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1012 amino acids)

>mRNA_794 K14834 NOC3 nucleolar complex protein 3 (Rhodosporidium toruloides IFO0880)
MPGKKRPASAKPAAPSKRQKGGASSSSKKGGKGASTAGTGTPKKERSAKSAAKKDRKGKG
PAYIPIPANGAKEGGRGEGADDSEEGRDEDDEDGFGTDDDGMMVDEELGEGLDGADFLTK
LDRKGMSASRPTLAEAYRQDKASLPTASRKSAFSHIKVEPAGPTKSELKAAKKRDIERKK
RIKAGEAASGDEDEVFDSADEDEDVPKKGKGGKDFPEGELVDDLESDDFAFGSGDDDLDD
LSTMDEWSDGPEIDTGDSLDESDLGSEDDDEEGLWSTDEGEKGDEGSDVAFDSNEEFGGD
PDESAEDDESELDDSFAGFDSDSDVDERPVKKAKKRAASEDADDLEARYEASRPLKKVKE
PKALPTKLPIIENGKVVRSGEVLEGAQAAETDEEEEVEEKKPRKVQEYKSDPLGQRFGRP
AVRQLLEIRNKKERIQRAKEEIADLGREAAGTGEGEGGLNLLKRLLSLCGQKFFSSSSAR
SAGEKPINVDREIRIMAMVSLLAVFIDVIPGYRIRELTEAEKEVQVSQIVARQREWEHGL
VATYKKFLEICEGEVTENTPVAPAALHCMCTLVREKPEFNFAVNTMDVIVKRLGRKGWDE
GHQICLDAVVYLFQNDTTTVAFNSLHLVRLISRLVRARSFAVRPEVISALLNLRLKDELG
GGRVRASADAVYREREGKNGVVRWNKEKNHKGRKGGKAKEAMAKKGSKKARQARKEQEAV
EKEMREAEGVINQEERERNQTETLKLLFALYFRIVKLDYRSPLLPAALEGLARFAHLVNI
DFFRDLLEVLKGLVYRGTDEGDSDEEVDEVADDSIDVKRNDMREKLLCIVTAFELLQGQG
EALVIDLGDFVSALYSLILPLSLSPTMEEAPYLAQNEMTLSHRQTHKLAQTEADLLFRAL
SAIFLIPRSLPSPVRTLAFSKRLLSASLHWPPATQLRTLSFLRSLLIREPKLEAMLETTD
RRIDGRWRGHVDEPERAEPESTCWYEASVFLRQHPDPAVRQEAKKLVNWQRE