Protein Info for mRNA_796 in Rhodosporidium toruloides IFO0880

Name: 9164
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 837 PF00172: Zn_clus" amino acids 36 to 60 (25 residues), 24.2 bits, see alignment (E = 3e-09) PF04082: Fungal_trans" amino acids 308 to 470 (163 residues), 26.5 bits, see alignment E=3.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (837 amino acids)

>mRNA_796 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MPADRITTSFSEAQRLGLPLSSHGPRHAPSIARGNACGTCRKRKLKCDGVKPLCGSCRKS
AVVHGEDPERVQPCEYADPNAPKKKRASPGSKVAALEDTIANLKAMLAKAGIDPENGESS
SESSPAPQPFPQYTAPSASSSGSIAPANFTIPNFGFTSPQTYPTTSAAATSLPDPLLSQP
AFSLPPTLDMHSFADATATTSHNFPFQSSSMRDLPLPQQAAGAPQQPSPPFTTSSSTNDA
TPPLTPPSPFFYELFYPGWPKSLPSPDLTTRLTEIYFSKPHICQDMIAPSRFRADMLLPP
TAFGFPHLSLLHAMCAVAAKMVSPDYFASEEMYWVGYSSPSDYHYAKAKAALDSAIGKGA
KFLRIAQASALLTYFCYTEGKFADLWMMVGNATRICTPLGLNHLRAASDEPAQPAHYKGY
LMQGTDDQEELYERAMVFYIALMADRYSSASTGWAASIDEEDYTTPIPSLARRQPTSPLE
LSALSPRNPNFWIAHPPHLVGPLQLFLKAVILLGKAVQFTQRAPHVLRSAAEAMSLNDPI
RDVRSTDAFKRIDAMIATFLASIPREYQFTHRPTPGVAPDVLTETRLCLTHAMSHNAIIL
LHEPWVNSISDQDESMRKCLTSANEILNTIFVIIGTSYEVSRLSPFINFCWAVAGRTFVR
KLAMLLVQNILQGQEEMKSNVQTILAVLRAHKTPLGDMSALQLEFLLENPLRTLPPPLLK
LVDPSLHPAPSNGPDCKFLIAAGAEGCFTEPNIEDHAPLFSSATSASASIRIDSVVEELL
RGEGAFSAKSTASMAMEMDALAASADGRTSGGLKSGEGWYAKADLGAIEALLEERGV