Protein Info for mRNA_814 in Rhodosporidium toruloides IFO0880

Name: 9182
Annotation: K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1082 transmembrane" amino acids 1026 to 1044 (19 residues), see Phobius details PF14500: MMS19_N" amino acids 44 to 304 (261 residues), 278.3 bits, see alignment E=7.2e-87 PF12460: MMS19_C" amino acids 555 to 997 (443 residues), 349.8 bits, see alignment E=2.8e-108

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1082 amino acids)

>mRNA_814 K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19 (Rhodosporidium toruloides IFO0880)
MAEGVPQMAQLVRAYLALDSPDPSTAQQLADGLARRDWKMLPIVKELGGSLTSEVDATRA
KGVELLSSVVVKMDKELLDRQMTKTLTTFFVDKLSEKTSLVPCSTALTELTACSTFGTGE
GMEVARGVLSSVTLKAHPQAIRHSVYVLLDHLMTHSRPALKRLGNDFIGGYCALVEGEKD
PRNLMISFSVIKVILLEFDIVRHVEDLFDITFCYFPITFTPPPDDPYGISSEDLIVALRG
CLSATPLFGRLALPLFLDKMQAASEKAKRQTLQALIACFPIYGAEVSGEWAGRFSEALII
EVFHASDTDMQDLALHTFRSLYATLYPDHLALPVEETHASDGADVEMSSAADAEDDEIEG
VAVKAVLNSLDELQEPDKNNAKPAVRILTAFIAASNRLARYVIKQILPPLLDLYKDQDQI
TLRPSILSHIATLLSSLSDPEPETPASAAPLFTPPTLSHAAGESPLEPFRDDLLTILTSS
SRALTCRTASISGLVALLKIPAFLSPAEVDFCVSAINDVLVQPDGDEYYDAALDALVIVA
RLFPRTVESSTLPILFRAFPSSPTPAPTSPESEAYRRALEALAALCLHPDLFEILTLRLT
SRLEEILAFTPTSPSDFSAATLYAHHILETLRAVLQEKIRRNHLDVGKFIERFVPGLCAL
FILPTLRASGDAAEDKREVAKDPRLLVDVGKVVNLVVQRVDLERQTSFSHAVNEAFHHGK
LEMLLGSAGKAADSAIFQPFSSSSPTSQQNLVSLFTSLLLAMRPAVSLPSSELLTFLRSF
LARSLVCQNEIQLVAVSHLLSNSVNKRAQDVGEFIDEDLLRFFSESVKDASKPLASRRSA
LRVYTWVAKGLIVRSDQRGYTMVDELLDLFHDSELGRTAATSLSVIAEDKDRVLSKENFA
VIRLLYKQRFFTYLLPKLVTSYKAASSEDQVIYLTALSSVLQHIPKQLTLSELPKLLPLL
ITALDLPDPLLRANVIDALAVLVKEVPAEMENSISGIAGKVLKGLTGGSGTGQLPAQARS
AAQLRLSSLSFLAVLPAHIPYLALHSQKAVVLKELGKAVDDPRKDVRRAAVECRSAWFLY
SG