Protein Info for mRNA_817 in Rhodosporidium toruloides IFO0880

Name: 9185
Annotation: K02208 CDK8_11 cyclin-dependent kinase 8/11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 PF07714: Pkinase_Tyr" amino acids 39 to 268 (230 residues), 97.5 bits, see alignment E=8.4e-32 PF00069: Pkinase" amino acids 86 to 377 (292 residues), 189.5 bits, see alignment E=7.8e-60

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>mRNA_817 K02208 CDK8_11 cyclin-dependent kinase 8/11 (Rhodosporidium toruloides IFO0880)
MPPQSPFPAYIQTPHDLYKSKRDFQRPTVLSRYSILGFLSSGTYGRVYKARVRQHTSDAS
PAGLLGTPSAATPGKRLKLSRDEGDDEGELVAIKKFKPDKEGEVVTYTGISQSACREIMI
NREISHENVTALREVMLEEKSIYLVFEYAEHDFLQIIHHHSSTRTQLPLGVLKSLLWQLF
NGVSYLHDNWIIHRDLKPANILVTEKGQVKIGDLGLARLYQEPLQSLYTSDKIVVTVWYR
SPELLLGARHYTPAIDMWSMGCIYGELLGLRPMFKGEEAKIELGAKKGGVPFQRDQLTRV
IEVLGSINPKDWPSVMQLPEYPQLSRLDRYQDCLSQWFNGRLPRGAPPSLAYDLMRQLLA
YDPTRRITARAALCHAWWGQDPKPHANAFTHLPPAASYPLRRVAHDDSDPKMQHNTLNKY
AYTASGGNLGMAGNLSGSGAGGGRKRGRD