Protein Info for mRNA_818 in Rhodosporidium toruloides IFO0880

Name: 9186
Annotation: HMMPfam-PQ loop repeat-PF04193

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 505 transmembrane" amino acids 39 to 59 (21 residues), see Phobius details amino acids 70 to 92 (23 residues), see Phobius details amino acids 98 to 115 (18 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 226 to 246 (21 residues), see Phobius details amino acids 261 to 283 (23 residues), see Phobius details PF04193: PQ-loop" amino acids 34 to 92 (59 residues), 24.5 bits, see alignment 9.6e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (505 amino acids)

>mRNA_818 HMMPfam-PQ loop repeat-PF04193 (Rhodosporidium toruloides IFO0880)
MAGAGMGFAPLDIVKLLARATAEVAVGLSTLDLVSKLTGWLSFGCSLWSCFPQICNLIVA
PGAGGPSLALLWLWLFGDIGQVVGMFLTGALLTQKFSGIWFFASDVVLILLTSIERGHFG
KRFRRGDRVQPPVPGRKKRWWLEFDSWKVNVFVLAIVVVGGTAAWVGIDYVRRDTEPPLE
PSKAPHDTLSRTGWALGMLGLLCYNLPRIRQILLIRRQRTLGNISLYMYLWLISQNVTML
VSILAITPPEGSAALGHFFGQAPFLGNVLFALTNDFISLGLYFRYDHGKPRPESINEGSD
VESDAADMAEAGLLSGTERSHSASRPQERSRDRHARLKQLDKHYNESLQLEQKRARGGAG
QLPILARRWLATDLDHRAAEEERHWHDSEVSQSPQSSGSSGDELGEARRRLEEKRKRLGD
MRTSRRHSDAMVEAAIDKELRTHPLREHIDRRKAESSGRASSTERRHESSGSSDEAEHLR
RPSQRSTRSIGKRVFHPRRGVGTDW