Protein Info for mRNA_819 in Rhodosporidium toruloides IFO0880

Name: 9187
Annotation: KOG1810 Cell cycle-associated protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1587 transmembrane" amino acids 712 to 729 (18 residues), see Phobius details amino acids 917 to 934 (18 residues), see Phobius details amino acids 1001 to 1019 (19 residues), see Phobius details amino acids 1070 to 1087 (18 residues), see Phobius details PF10350: DUF2428" amino acids 738 to 1001 (264 residues), 192.6 bits, see alignment E=4.3e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1587 amino acids)

>mRNA_819 KOG1810 Cell cycle-associated protein (Rhodosporidium toruloides IFO0880)
MSASSAAEPRDERFEGLLALRERLTRDEKQAKSRRQGKEADEDGGEGQRPLDYTHAFETV
LPYVSSTWTAVSSAVHKGSNPFVPTTTAFETLDVLLRRAQAVLTARAYPEELDAVRPQLS
PDFLVHLSSILYATWDKQLPSALQKLRASLVTLLAIASPACLDVQDVSQQLKEKVLVDAL
DSRRALSTLEALMPHLAVEDFAPFSESSADMQDIAAGVMRRFIRAIALNDEQAQLVGKTA
LSWVEKCWATPDVDGNAFVIGPCLEACRTDSPKLRHSVTTYILQGAFSRRKDLFAEMLQS
GGYLFTDRSTQDMPEADLEAALAIFKTGNALNLVEMDASPHAKLLKKVALPSTLLRSCLW
HSSTSLRMSALSVLVLAQSPSVPLPLSSFPLLRDFYLFSLSDEDAEFRMSTTSLTGKLLL
RLRDSSWKAQRTADKGKDGAAAAAEYVSAAKGFLEWFLNLVGRENLNPARPFRLKITSLR
LLDLALQAHVDPRFRIEDQASAGDGEQTNARDATNGFSSYRKTAKTQTPTFHAKHRKMDR
NDHLHAAASQSAWPFDVALVTPETTQTLLRQLLSTYTAVRYLAISMLERFPSPLPGYDGE
EGTARAKEELLRPALRMIRSGREAEASAGAGVIGLVWRKWVLEAVDGGGSAIEDGSTLGA
VGGWLEGEETKRGPAGYAYISSLLDLVEQQLSQYSVDLATAASRVPMHGTILALRHLFIS
IPAASYATLSSADSRRSIFHRTLGVIKRVWDVTSPVLAAQAPEGNGGDDADTEEARAIRF
ERQALAGNGEDESEAAEGTGGTQHKIILSACWRAMKEAGELLETILRIPSELDADTFRQI
WHLDEIRAIGDLFGTWLRLARHRGTVANLHPCFSRSAAALLVAGKRWEEVGELPGSWLKE
YLEAVVSARISITRRSAAIPFVILGVMLAILPTSRPTFDAALIRLFEIAESTTSDITDES
RTHAMNTLRTIFLDAKGGVAAQQYVERGFHLSIRLFWSPNWILRNVAMMLFGSLINRAIN
SRRANLDRDPVSLSKRVSIDDFFARYPSLQPVLQQELERGWRESASLPPSSNLQSSLFAI
LMLFSLLRTPKRLSTPNAAGKPTSPSTAFIPLVEACLASRVWKIRNVAADALTGLVAPDD
VADACLAILTKIRQTTDEVSLNELHGRLLQVLRLVEVYPLEPDDEKRVSAAFVDLLPTFF
DAGRYPPTILSAYLTVALHLPSSLPQVSVVAVDVVQQSERSSAEHRRLPGAEELTRSSWE
VLFHGSLDDEKAALLGGALAGSSLETKRAALSKLEAAPPRLLQRTAALLYRVVLDASEAG
DVRVQAATLLHAVSSSSFGAKFEEVAASHRETPIVPLREALLPIVASAACSEAQRSQALR
LIEQASGVDESVESREAAGAALICFSQLFDSLDNLSASLRPHFTLLASRLLQDDDVTVRD
YAAEACGLRLVEGKAVEQVVTDDGEPLRQLLLEEEERDLQQDLALISNPSSLLFAVEKPN
IFRDFALSTSLLLPSFSPASSDSVKAHVREQVAKLNEAVTASKNLPAGPLGLTGNELVSR
WANTLVGRLDAMGEEDKEAAALLRPST