Protein Info for mRNA_821 in Rhodosporidium toruloides IFO0880

Name: 9189
Annotation: K14301 NUP107, NUP84 nuclear pore complex protein Nup107

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 809 PF04121: Nup84_Nup100" amino acids 55 to 766 (712 residues), 523.8 bits, see alignment E=3.5e-161

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (809 amino acids)

>mRNA_821 K14301 NUP107, NUP84 nuclear pore complex protein Nup107 (Rhodosporidium toruloides IFO0880)
MAEIYTDFAQELQRVQEGGADLLDEADGLLARWGALCEAQLQNLAEDVDGDAVDAWTLER
NTWALVQALYAERLNEDPAEPSSSKNPYTPPLTVAQKLIEGNKDLVELSVIRDWLHSIPS
SLNPAEIRRGYQPYTKNKLKQVRRTGAKAPKGLVERLDPDALLRAKMEDEGARLEADDAA
YERALLRSLYEYVRAGELDLAIDMCRQSDQSWRAASLSGGKLWWDPALAPNEEGYDEIEM
VEKEEKRIMGNANRKLWKTMCRKLAAQNTVDPYERALYGALSGDVASVLPVCSSWEDVVW
AHLNALFESHVEAGLASSPSGRYWQRSSVAPLDSKTPLDPEDPLFGSAAQGRAIRRELEQ
VFEKLLRSDKADLAASAKNPFHVSQAYLVSGKIDELLNAFVERIEAAATDTEPETLAHLL
RFFSHLILVLRLLKQPLPEYAANRILEAYVHVLEAHDQDENLIAFYASNLEQQSAVESYA
RFLLTFGLDSDVHARHLALRKSREHGLSLPLIARRTVELILSSTLATLPPSFALPATGLD
AYARVDARQLELIRSLEWLTAEKETYEDAIKEANALARWFLSTDAPSAARQLLRSLPDDL
LPSLASASTTTGSNSEGGEPSLAVQLDIREHLDYRALYDCLDKHARWSEVWARRPGLGAS
KLDVAQYREGVAALVEEFYQSAVELLEGEWLKLDGLDATVDAAASRRHAELARIRRLVVP
DLVFRLHRVLYETSDLIPANLPLCLSLANLVADERYQLYLEFVAASPADIDTAPLGLKAY
LEEVRKASLASLDAGRGPFGTEQPADQRK