Protein Info for mRNA_822 in Rhodosporidium toruloides IFO0880

Name: 9190
Annotation: HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1821 PF01369: Sec7" amino acids 923 to 1084 (162 residues), 112.2 bits, see alignment E=3.8e-36 PF15410: PH_9" amino acids 1274 to 1407 (134 residues), 49.6 bits, see alignment 7.7e-17 PF00169: PH" amino acids 1289 to 1404 (116 residues), 35.5 bits, see alignment 1.8e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1821 amino acids)

>mRNA_822 HMMPfam-Sec7 domain-PF01369,HMMPfam-Pleckstrin homology domain-PF15410,ProSiteProfiles-PH domain profile.-PS50003,ProSiteProfiles-SEC7 domain profile.-PS50190,SMART-Sec7 domain-SM00222,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF48425,SUPERFAMILY--SSF50729 (Rhodosporidium toruloides IFO0880)
MPQRPLQQQSRGRERKKSFIGLGFGGGNSSESEGAPLGRRRISFGLGGGASSNAVDNPVR
AHEASSPVPDNAKPTPKKGGTSGARAFLRRARSFGTSPVLGSSNGGTFAAAISADQHPPL
PLNSPVLPLPRLSTSSLSVDTVSPIDSLAVLSGTSTPLTPHSPYYHNYPSTSSAYLPSPQ
LGQSHSSSATGSTMVLPEPIPSQPHWLFAPAPGSSATRDAASSPRSSVEQSRRRSADERT
RDSHESSSGRSITHAKGKGKAKEGERERGLSAPSPAPTPKRKTRRATLGGLFGRKEPKAS
IPPAGVGGSRSSADDAGAVGEGPLVHSPSESPALSGRTTRENSLASDGVPTASIPSLPSL
PSLQLSNNPYRMSWAFGRESPSNSPEKGRSIPPTSSSRSPSRGERPTLSITTTPTDTPAP
ASPVDQVSPSRPPLVGAQTLPLPVAPPLEQAKSSDSGSTLMIRAPAQTSASPTTPTPPGY
ALSRGGLSASTPPSLRRSNSYAPPSTSRVAFAGSTAPLTPSPLSSPVKERLNPLSTSSSP
GAEAPPPLPSPGSTAAPQTSPSLARTLIKTRAARSHSDASDRRSPSLSTPPAYAFSGRNM
VVGGLGIPPGGGYFPQAHQKVGASRPTTADSATGGASPGGRSSVFGSLGSLFGGGAAVSQ
NMSRSSSAATTGTTGAGTPATSPGLSTAGEVSEFGALFDQKRSSSQARPNSSRRRGLSVG
AGIGSFFGGGGSAGTGSASSLLPTGPSPSSATTSPSKVQNRERSGSASSVNSSTLAPPDH
GGSVGGRMRALTDPNRRFSFSLGGGAGGSTSLAPPGSSGGRPVTADGSTSPAGRGSRSRG
NSLSTDLPPEPKKVRKPPKPRDGESPEEYVRRLLEGDSASRRALRVEPADGDAQEVMLDS
NGNSDSVSVEKREDEGDEANGPLPKGEVTKVLSLSADPFYAAALQAYLRYFPFHQLALDI
ALRVFLCSASLPSETQQIDRVMEAFARRYVECNPGLFGPPPKKRDVGDEGLSAEGTEEGR
VGTRKDGQQESDVPYVLAFSMVMLNTDHFNPNAKSKMTKADYIKNTRIDGVSPEILEYLY
DQITLAPFIFVDHGTPGAGLLGPSTSTAPLLGGSIGPSGSSSSVANSAAANSSFFANNAS
KGKVDPYHLIATNQTRRFRVDVESHIPSKSPFSFSGTTSFFDTTSLHSLFARAPVLQIQN
RPRTSRSNSSTFASTAPYSLPLPSPPVTTVPLPPSPDPALAGSPLTPTVSNGTFIADAPK
KKDRPPISSLKITKVGLLSRKEDLAEGGKKAASRKWRGWSVVLTGSQLLFFKDPNFAASL
QQSLRAAAQDSTPRPNDSSVLSFTYPGSFKPDAVLSLANTAAIYDATYSKYRNVFRLVAP
AGRQYLFQAHNEDELNSWLSAINFSAAFKSANIRIRPLQPAFPSPLPSSPRPSLSPFQSQ
PAFDSARASASEASSRPTTPRMVRSAAQGSLATAQSPKVLNDSSSTTPRPNPATHARSAC
DSSPSVEDRDDETPLSMLLTPRAGSSGTSASGIAGASQPITARADLLRSRINNLDVEIRS
AKERLQADLRLAKHLAILTPFRSATRERVLMAIPPIEKRVRHTRMHLAKLVCYREVLSRD
LLVEDREAERLLRKHSLHRTHSRRTSSVPRQRSPSRQHSRHSSANGPARPSHLSHSTTSP
RRLHASHTDSERTSFESAAESLSALANGTDLDQPLSLTDDELDRLQLRSPPLMQRSKTET
DWQNVVPLETLSLDPHEPSSSNRLRSNSELVSEDDFESRLRDAEGRARASSASSNAGAAD
RIVETSPAPPTIPEGDLSTLR