Protein Info for mRNA_835 in Rhodosporidium toruloides IFO0880

Name: 9203
Annotation: K16365 SGTA small glutamine-rich tetratricopeptide repeat-containing protein alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF16546: SGTA_dimer" amino acids 7 to 70 (64 residues), 68.9 bits, see alignment E=1.6e-22 PF13414: TPR_11" amino acids 100 to 139 (40 residues), 34.4 bits, see alignment 8.4e-12 amino acids 168 to 196 (29 residues), 31.2 bits, see alignment (E = 8.7e-11) PF13432: TPR_16" amino acids 100 to 158 (59 residues), 27.6 bits, see alignment E=2.3e-09 amino acids 133 to 194 (62 residues), 23.8 bits, see alignment E=3.6e-08 PF13181: TPR_8" amino acids 129 to 159 (31 residues), 15.9 bits, see alignment (E = 7e-06) amino acids 162 to 194 (33 residues), 31.2 bits, see alignment 9.2e-11 PF00515: TPR_1" amino acids 162 to 194 (33 residues), 41.9 bits, see alignment 3.5e-14 PF07719: TPR_2" amino acids 162 to 194 (33 residues), 34.3 bits, see alignment 8.5e-12 PF13176: TPR_7" amino acids 163 to 195 (33 residues), 25.5 bits, see alignment 5.5e-09 PF13374: TPR_10" amino acids 163 to 189 (27 residues), 15.5 bits, see alignment (E = 7.7e-06)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (345 amino acids)

>mRNA_835 K16365 SGTA small glutamine-rich tetratricopeptide repeat-containing protein alpha (Rhodosporidium toruloides IFO0880)
MSSATAQKRAAFAVLQFLEDSLKNGSIKEDDKEGIEVASQCIAEAFGVSGESDQDKRAYG
LSKPLPQLLDEVAAQTSTDALPKEASAEDKQAADAAKSRGNQLMAKKDYPGAIEAYSEAI
KKDASNPVYWSNRAAAYSQVQDHKSAVSDAREALKIDPSFSKAYSRLGHALFSIGEYQEA
VEAYEKGLELDPTNATMKSSLSTARSRLPASSTSAEPAAPADSVSSRSGASAGAGAGAGA
GGIPGFPGMGAGMPDLASLMNKPALMGMAQQLMQNGGLERMMQNPMMQRMMESMGGGGGG
MPDMSALMNDPEMRRMAESFGSAMGGGAGGRGGQQGGSNNSDMYS