Protein Info for mRNA_836 in Rhodosporidium toruloides IFO0880

Name: 9204
Annotation: K17387 KIF23 kinesin family member 23

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1084 PF00225: Kinesin" amino acids 289 to 645 (357 residues), 270.1 bits, see alignment E=2.4e-84 PF16796: Microtub_bd" amino acids 296 to 357 (62 residues), 34.4 bits, see alignment 2e-12

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1084 amino acids)

>mRNA_836 K17387 KIF23 kinesin family member 23 (Rhodosporidium toruloides IFO0880)
MSARPSRATRSSTAATAPSAGPSTGLRTRKQSSLAPPPPPPSTSSNTARRTTRSSRSTTP
APPPEVKVTQTRASVARAATTTSAATRPLRTSSRLNVASPPPPTTPGVRRGASLAVPAST
VKPKTPGLLSRMTSRESLRQPKTPAAHSGAVGHLARASDGFEGPREPIKAYLRIRPAPPG
VPLQSYIQVLNDTDVLMVPPADHRLNPSSSTSSLFSNALLRSSNLNLNPSSHPSGVPDDV
LASPTPHSQVSAPDPSTFGALYKFTSVFPSTSSPPSSPTTPTASQTKETGQTQSSFFRAT
TLPLVRDFLQNGENCLLFAYGPTGSGKTFTVQGGAGEDRGLLPRVVEVVWKSLEKKRAMP
GQFTPPRVAPARGPMTSTPNTKPVDQSAPEDPDFVPVDQNYEYAVWVSYSEIYNEKIYDL
LESPIPAPTPSTPAASASSGGGMLKGLFKNFTTVKRSALSLKADKAPAVGQGAATKVVGG
LQEVKVSSADEAHAVLSRGQSNRRVFSTLANRASSRSHSIFTIKVVRTSRVTGSESTSRF
SIVDLAGSERVVHTQTTGDRLREAGNINKSLMVLGQCMEVLRKNQEREKGRKPAIVPFRH
SKLTEMFQSFFVGDGKAVMIVNVNPYETGFDENSHVMKFSAVAKGVMTVKRGPDAVVAAA
PVPVPPELKPLPEVKKKAEPRIVRLSLVEGGEEEEIIYEEEDMSDDEDEDEFVNALLDEL
SILRTALYESQLNAELVESNVRAQITKEYEQKMLDMERRFQERLREEAIEAENKLNAKLD
ILTRLQAAKTPGRGANRKVSLTPSTAYDDSDDGEAVEGEEEEEEEEVEKMLLSASRGAES
SFAESSASMSPLAHRTKAIGHNMDDASHRAASKALSPLAQEVFGDEGEQEEVADDEEAPE
HAQAVHNEDANVADAVHVEADLSAAAELDEVEPPVGEEESIVELDAEHVDEADGSGDDFV
DDGASNGSDADYKLSPPRKKPSPLKKAVSLDAHTPVSTPKTRADKENEVPGSAALAGTDG
AGGDEADEADEFGLDKSMVIRSGSKNKKSKRKLGAKVVDVEDIDTYEGVLSPIRKTPSNR
NFLY