Protein Info for mRNA_851 in Rhodosporidium toruloides IFO0880

Name: 9219
Annotation: HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1044 transmembrane" amino acids 324 to 340 (17 residues), see Phobius details amino acids 350 to 372 (23 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details amino acids 774 to 795 (22 residues), see Phobius details PF01764: Lipase_3" amino acids 692 to 874 (183 residues), 52.2 bits, see alignment E=3.1e-18

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1044 amino acids)

>mRNA_851 HMMPfam-Lipase (class 3)-PF01764,SUPERFAMILY--SSF53474 (Rhodosporidium toruloides IFO0880)
MRDWFYRRLFWRTIRQRRVSMVRSSLSSRASLKLTYWDGAGLLGGRTSRRLSRLARHHAR
LYAQGRAPPPPFPHNVVKAAAKVVRLLGPPGGYDHRRPVLEREEGEKKGKGKGKGMSLDQ
AAQIVETALSKERRDEGGRQEERQRRRVKRAESGLRAYEIGVEVGRRVAGRLERHRSRRG
ELVSQLTAEGKRDEASRRSDSLVAATPAQLLGVPPSPSSVGGPIKGSSSSYPASTGDIDD
IPPLPPAAPALRPLSIPDLPPLPTVATPFNLDPSSPDDYFALQKRRRTGLSSNSPSKLAA
FAIPSTPKTPFILQPLPNPSPMRTALLDWVIFLLIGSPRSPTVAGFDSSLATVGGLIGIL
VHSLGFLFFVAYHLTTLLISSYGALRTTAVFIYWAGLNLSGRTEVSKAVVEYWRTCRSEW
DKVVDEKGEDTVSVIAVLKGVLELAALHRMTRQRWLQDGPGHLKLLNGVNDVPTRLATPR
FGPLRPRQSIDLERPSITQRQQSWRWTSNGGEEDGEGLVVTGHEGGILQGSIISHEEPRS
LPSARSQKPSQASPDKRATINQLLEEEPPPLDLAEPEPSQLPASPPLQPIDERADPVADL
VALIKRHCRLSTASYGLHTMLPSPPTPLLTPSGQTLPHRLFAHLGGLTDHRNVLHVALQK
RYTGIPSVEDEIEATYAPQFYVLRDDLRAEVVVVIRGTQSLADVRTDLDGSLIPLDLPTP
PTPASHEPQEPRTISSPYRIHSGILATARHLLSPVSTSPLYSKLAAILAEHPRYGLVFTG
HSLGAALASSLAILLGEYNEAERRWVVSDSSSLASLSTPDSDRPPLFRRPVRAVCFAHPT
TVNAPLSQYCATPNSPDGVPLVINVSLGADVICRMGIPQVKELRRAIGRLDKMRKRESSG
ILSSRREWAKLDRAIEEADDEEREQLERKREELVDCAWRLRCAAEGWLDGGDAVKEDDVD
TAIPAGRCYHLDHLPPDVEVKRRAELRKAREVEGDESAGDDEDELLCGLYEVRDPRRFYA
MPLLEADLVAAHMPKAYLDQVESL