Protein Info for mRNA_856 in Rhodosporidium toruloides IFO0880

Name: 9224
Annotation: KOG0828 Predicted E3 ubiquitin ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 905 transmembrane" amino acids 20 to 37 (18 residues), see Phobius details amino acids 501 to 517 (17 residues), see Phobius details amino acids 538 to 558 (21 residues), see Phobius details amino acids 564 to 586 (23 residues), see Phobius details amino acids 648 to 666 (19 residues), see Phobius details amino acids 672 to 690 (19 residues), see Phobius details amino acids 702 to 720 (19 residues), see Phobius details amino acids 733 to 753 (21 residues), see Phobius details PF13639: zf-RING_2" amino acids 840 to 897 (58 residues), 32.7 bits, see alignment 1.9e-11 PF12678: zf-rbx1" amino acids 840 to 897 (58 residues), 32.4 bits, see alignment 2.3e-11 PF00097: zf-C3HC4" amino acids 841 to 896 (56 residues), 21.9 bits, see alignment 3.2e-08 PF13923: zf-C3HC4_2" amino acids 863 to 896 (34 residues), 27.9 bits, see alignment (E = 4.3e-10)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (905 amino acids)

>mRNA_856 KOG0828 Predicted E3 ubiquitin ligase (Rhodosporidium toruloides IFO0880)
MDLPPPNQQVARVQQQRPDLRFIFFLMMMFWMMQSNGTQGPSLADQVSTGDVSAAEAYAN
ARAGLLRREARREGIARWLGVGNQTGEWLNSTYFPDVANGTAPPSSNDTAYEAYRIENYA
PHSDGELAPVPPLVRDIFADATPKDEGDYRLYQQNLTGFAKGSWHARRFTFEELGLNETW
QETRVVAKKPEEAEGAAGNETVASEVATRRLLRRQNDTASANFTTVVDTFNRTSLRGSFP
WLSSLAANPFTLRKTHPAMFNLRSLQTSATGPIMPLPSDPRLVDEGELLRMRQDDPATWE
DWEKEGPAVYVGGQLTLSVRDEKGVDEEESLELDIEAVHLLSSGRVYGYATPSFVRTHMV
DAISLPLMSSSSPSPNRTASAIGHTVLKEYTRRLDKGVKDLAEADRIETPSSSEPGEADP
SISQCIFSLCGALSPLPASYTPTQYAEWYSALFHPTGSSIAQPAQSTFSALLSSPNCGLV
LSVPSAVLSQTSELWDSATRFAGWLLLAHAAVLVLTVRQLERVSRRPGTVANVAPQSIAG
NCIVDAYVFVTLLTIGIVTESRATLPLLGAAFLALLSSLLFGTRYIALIREGTPDRPAAA
RAEPVQAAAPAEEGGEASTATEAAREEREGVVVRWARRQVAQWRRRDTILAISLGLVAYF
AISLLMRGWTPFMLWIVYSNWIPQIALNVYRGTARQSLANEFVVGTTIARLFPPLYFWAY
EGNCLLVEPTPKVWYLAAYSVAQAAVLVLQSLFSTPTSPATRMLLRLPFFSSATTGGGAR
FFLPEPLITTLELPSVSSWNYHPRELPPALLADLASQELETGGGDKASHDSHAKGAPEPD
CPICLSPIQVLPTKDDIAQGKEDEVRMAFAITPCGHVVHTECLEQWMMVRAICPVCRASL
PALAT