Protein Info for mRNA_857 in Rhodosporidium toruloides IFO0880

Name: 9225
Annotation: K14565 NOP58 nucleolar protein 58

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 PF08156: NOP5NT" amino acids 2 to 71 (70 residues), 54 bits, see alignment E=1.8e-18 PF01798: Nop" amino acids 177 to 411 (235 residues), 275.7 bits, see alignment E=3.1e-86

Best Hits

Swiss-Prot: 62% identical to NOP58_CRYNJ: Nucleolar protein 58 (NOP58) from Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)

KEGG orthology group: K14565, nucleolar protein 58 (inferred from 62% identity to cne:CNF00090)

Predicted SEED Role

"Ferredoxin" in subsystem Soluble cytochromes and functionally related electron carriers

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>mRNA_857 K14565 NOP58 nucleolar protein 58 (Rhodosporidium toruloides IFO0880)
MLVLYESAVGLALFKIKDSKVEGKQDELAKEFETPEGANNLTLCGSVKLQAIHRFTSTAS
AVEDMTAIGEGKLSKSLKKFLTDEISGNKKLKNEKLAVSEPKLGGAIAKKLEINVVSDSS
VNELYRGIRQQLSSLLGDVDPRDLATMELGLSHSLSRYKLKFSPDKVDTMIVQAIALLDD
LDKEINIYSMRVKEWYGWHFPEMGKIITENITYAKVVKAMGFRTNYATTDFSHVLPEELE
ETLKSAAAVSMGTEISDQDLAHIHLLADQVISITQYRTELYEYLRNRMAAIAPNLTALVG
ELVGARLIAHAGSLVSLAKQPASTIQILGAEKALFRALKTKHDTPKYGLIFHASLVGQAP
TKLKGKMARMVATKTALSVRLDALADADSKSTVESATIGIDNRVKLEARLRQLEAGAGFS
SLRAQAKLNGGEKQKRFDMKGNGASYSTGADSVTLISTGVEAAPGADEGVEKMVVADEVE
GETEEQRKKREKKEKKERRKSEKAAGGADGEATGETEEERAARKKAKKEKKRAREEEDGS
PKKKSKKSKTRDE