Protein Info for mRNA_858 in Rhodosporidium toruloides IFO0880

Name: 9226
Annotation: K10599 PRPF19, PRP19 pre-mRNA-processing factor 19

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 549 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF04564: U-box" amino acids 6 to 53 (48 residues), 25.9 bits, see alignment 1.8e-09 PF08606: Prp19" amino acids 92 to 157 (66 residues), 100.7 bits, see alignment E=7e-33 PF00400: WD40" amino acids 236 to 268 (33 residues), 12.7 bits, see alignment (E = 4e-05) amino acids 273 to 315 (43 residues), 18.3 bits, see alignment 7e-07 amino acids 419 to 460 (42 residues), 16.6 bits, see alignment 2.4e-06

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (549 amino acids)

>mRNA_858 K10599 PRPF19, PRP19 pre-mRNA-processing factor 19 (Rhodosporidium toruloides IFO0880)
MSLFCSISSVQPLHPVVSPAGNVYERNLIVKYLRENDGKDPITGDQLAEDQLVEIKTGEY
ECFRLSGGLTGRLASEVDLYTRPAAPPRAPTFTSVPSLLHTLQQEWDSTMLECLELRRQS
AELRQELSHALYKEDAAMRVLARVTRERDEAREALASVKATLGPQFSTGNGAGGEDAQME
VEQQEPEGLPADARKRVEETSAALSATRKKRKPSPECATPDDIKTYAQSTTIPSLHTTKP
PGISALALAKDGNLLVTGGLDKNVILYDRLTGKIVATLKGHTKKVTSVLASPTLTEEGIP
TFLVSSSLDKSVRVWTPNGKKTVYECQANLALGSEVNQLAMHPSNSLVASVHADGSFAIH
DLVAGDKPHTVLTASLPEDAAPGTANTAVAFHPDGVLFGVGSSDSRIRIFETLTGRLAAS
FDGHAGESDAVKEVVSLSFSENGYLFASAAQGSKQVKIWDLRKLVNSANIDFGAEDENAA
ASAVAFDYSAQFLAVVGQDARVYQNKTWELLAKNDDNIAELTGVQWGKDSKELVVAGIDR
TVRFLSKPE