Protein Info for mRNA_859 in Rhodosporidium toruloides IFO0880

Name: 9227
Annotation: KOG1032 Uncharacterized conserved protein, contains GRAM domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 933 transmembrane" amino acids 819 to 841 (23 residues), see Phobius details PF02893: GRAM" amino acids 346 to 455 (110 residues), 92.5 bits, see alignment E=1.7e-30 PF16016: VASt" amino acids 599 to 745 (147 residues), 126.1 bits, see alignment E=1.7e-40

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (933 amino acids)

>mRNA_859 KOG1032 Uncharacterized conserved protein, contains GRAM domain (Rhodosporidium toruloides IFO0880)
MAATDSRPTTASSDASEPVLVSAPHSPTTNERATATTAPGQTTTGQTGSAPTLSPIPTNQ
PRAADEGVGRPLTHEPSPIPPPHVVKDTASETITTLDPSPAQNTTRGLGRPGNEELGHLN
APPVMGGAEGVVGEAAGLRPEWIAKVKKVREPEDAATREVGPEGSKGGASIEDGDDGDDE
GGDVRPDKASGQSRWLKKVKVGVASIKEKAKDVRDSAASSITSSSTRDRANSAASSTAGS
VRARSRSIGAKSTVGFDVPDDGDAPPPAPIKPVVTRVITDFEGTPVPTDIGPSGGGTPTT
SMRDAPVASQGAGLAPPPAGANASTTTSVRDKILESHDVDPRTTNEKFHSLFKEIPDDEE
LIEDYRCALQRDILVQGRLFVSEHFLSFRANIFGWETSLQIPWSEIISVEKRFTAKIVPN
AIEVRTLHATHTFASFLSRDAAYALLVAVWRHVHPEADEYRAKARAERQEERKRRRAFTV
SSLRSAKSAPNPAGMADHDSDTDNDDGDDEDSKSEISFEDEHGHKKRHRFKLRSGLAALG
LNIGRDRSASVSAGSASASTSAGPTEAEKVKAQARAASAGVDTHAPTEYTGPEYKNEALD
TILPTSPDKAFKLFFLDADFLRTFMAEKENLRDIEMGDWQALADGDLKKREMAYVKPLNA
PVGPKQTHCAITDTNEKLDEDSYFSNLTVTKTPDVPSGNDFSTVTRTVFTWAEGGCCRVR
VTTEVEWTKVNRFLRGVIERGAVDGQKSYHRDLETMVRDYIAAHPNEYGVAGGAPTAAES
KSAAPEVKATDTAATEAKPAQPSGSFLSSILGSLPEMSLPMVALAILVAFLALTNLFTLI
SLREQAAIARSVRIGHPGEVSAAVSRVLSEFNDLHTKRVAGATGEGLAGEVEELGRVLKG
LEKTLHGVMGDMHRALHSVKEVADRTEGIKSLA