Protein Info for mRNA_861 in Rhodosporidium toruloides IFO0880

Name: 9229
Annotation: K03513 POLM DNA polymerase mu

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 374 PF14716: HHH_8" amino acids 35 to 102 (68 residues), 31.7 bits, see alignment E=3.4e-11 PF10391: DNA_pol_lambd_f" amino acids 122 to 169 (48 residues), 42.8 bits, see alignment 7.3e-15 PF14792: DNA_pol_B_palm" amino acids 171 to 246 (76 residues), 56.6 bits, see alignment E=5.7e-19 PF14791: DNA_pol_B_thumb" amino acids 309 to 371 (63 residues), 76.7 bits, see alignment E=2.6e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (374 amino acids)

>mRNA_861 K03513 POLM DNA polymerase mu (Rhodosporidium toruloides IFO0880)
MPLTSDSDSDTESSDDEQAVPMLACRRLSPRPCINQALVDELKPLREFRFLQYGTHAKES
ISYATAVSCIIGTPFKIETVEQAAKIPKIGEKLTLKIQEFLDYGFIKESREVQQSERYRV
LKLLTSVHDVGYAKANELYERGVRTLEDLRRAMNRPRIKSYLKYYDDMQEKIPRSEVESI
LAFVELQLNRIKPGFKTLLCGGYRRGKEFSNDVDILFTYPHRDGEERGVLQALVERMQQK
NLIPEDGILTLTTCGTDRTITPNRSATLLDALDKALIIFRHPANGTTRVRDKYRRVDLVV
TTWREWGSAVVGWTGSTQFERDLRRHAKRINLKFDSGGIRNRTTDEPVEAVTEKDVFRVL
GLDYIPPEMRNADP