Protein Info for mRNA_877 in Rhodosporidium toruloides IFO0880

Name: 9245
Annotation: K07425 CYP4A alkane 1-monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 579 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details PF00067: p450" amino acids 117 to 483 (367 residues), 136.4 bits, see alignment E=6.6e-44

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (579 amino acids)

>mRNA_877 K07425 CYP4A alkane 1-monooxygenase (Rhodosporidium toruloides IFO0880)
MHDALTLTVEPYLYWTLAAVLIALLATLILHALELDHPHSVGSKARPDLYEPKGAIPLLG
HTLLFLRNSRRLSEFVLEAHAARRRDGVEDGAKAVSMTLLGGRLIWLDRPEHLEYIQRTN
FANYEKGRHQRDELGVLLGEGIFVSDDKAWSMWRKITARAFTVNSYRNVMSASIHHLTKL
FIRTLEAKASEGAAIDLSALLFALTLDTFTSISFSKNPGSLPAAARGETNAFAQAFDDIQ
VLLAGRMSTPFFWLVERLDGTSERIVNDMKVIHAYADEIIYERVEKVQQLDEDGNLDMLG
RYMAATKENGEPLTTEQLRDATINLLIAGRDTTAGTLAWTIFELLRNPALIEGIRRDAAE
LDDPTELPFDSLKEMNWTSAVFYEGARLYPTVPNNHWTARGEDQIRESRAPRGQRSHADG
YLLAANGPKIQGGDHIAWSDWTIARDPAVWGPSAGAFDPNRWLDEDGKFRKDPRLHSFNG
GFRRKPSRHAPARMNILVHFPTSAYRSLAGETLAHFEAVATLLALFSRFDLSFAPGYLES
TPMVKTEWCEHDSPKYRPALTLPMEYPLRVVAKKREGGS